ISOLATION AND CHARACTERIZATION OF 28 MICROSATELLITE LOCI FOR A KOREAN ENDEMIC, LESPEDEZA MARITIMA (FABACEAE)

被引:4
作者
Jin, Dong-Pil [1 ]
Cho, Won-Bum [1 ]
Choi, In-Su [1 ]
Choi, Byoung-Hee [1 ]
机构
[1] Inha Univ, Dept Biol Sci, Inchon 402751, South Korea
关键词
endemic species; Fabaceae; hybridization; Lespedeza maritima; microsatellite; taxonomic entity; INTROGRESSION;
D O I
10.3732/apps.1500089
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Premise of the study: We developed microsatellite primers for Lespedeza maritima (Fabaceae), a Korean endemic shrub, and conducted cross-amplifi cations for closely related species. Methods and Results: We produced 28 polymorphic microsatellite markers through reference mapping of 300-bp paired-end reads obtained from Illumina MiSeq data. For 47 individual plants from two populations, the total alleles numbered two to 13, and observed and expected heterozygosities ranged from 0.067 to 0.867 and from 0.064 to 0.848, respectively. Most of these markers were well amplified in closely related species. Conclusions: In future research, the microsatellite markers described here will help reveal the taxonomic entity of this species.
引用
收藏
页数:4
相关论文
共 11 条
[1]  
Akiyama S., 1988, U TOKYO B, P1
[2]   Phylogenetic analysis of eastern Asian and eastern North American disjunct Lespedeza (Fabaceae) inferred from nuclear ribosomal ITS and plastid region sequences [J].
Han, Jeong Eun ;
Chung, Kook-Hyun ;
Nemoto, Tomoyuki ;
Choi, Byoung-Hee .
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2010, 164 (03) :221-235
[3]   Genetic differentiation and introgression among Korean evergreen Quercus (Fagaceae) are revealed by microsatellite markers [J].
Lee, Jung-Hyun ;
Jin, Dong-Pil ;
Choi, Byoung-Hee .
ANNALES BOTANICI FENNICI, 2014, 51 (1-2) :39-48
[4]  
Lee TB, 1965, B SEOUL NATL U FORES, V2, P1
[5]   SSR_pipeline: A Bioinformatic Infrastructure for Identifying Microsatellites From Paired-End Illumina High-Throughput DNA Sequencing Data [J].
Miller, Mark P. ;
Knaus, Brian J. ;
Mullins, Thomas D. ;
Haig, Susan M. .
JOURNAL OF HEREDITY, 2013, 104 (06) :881-885
[6]  
Nakai T, 1923, SHOKUBUTSUGAKU ZASSH, V37, P78
[7]  
Ohashi Hiroyoshi, 2014, Journal of Japanese Botany, V89, P1
[8]   GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research [J].
Peakall, R ;
Smouse, PE .
MOLECULAR ECOLOGY NOTES, 2006, 6 (01) :288-295
[9]  
Rozen S, 2000, Methods Mol Biol, V132, P365
[10]   MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data [J].
Van Oosterhout, C ;
Hutchinson, WF ;
Wills, DPM ;
Shipley, P .
MOLECULAR ECOLOGY NOTES, 2004, 4 (03) :535-538