Unknown unknowns: essential genes in quest for function

被引:57
作者
Danchin, Antoine [1 ]
Fang, Gang [2 ]
机构
[1] CHU Pitie Salpetriere, Inst Cardiometab & Nutr, 47 Blvd Hop, F-75013 Paris, France
[2] New York Univ Shanghai Campus, Dept Biol, Pudong New Area, 1555 Century Ave, Shanghai 200122, Peoples R China
关键词
BACILLUS-SUBTILIS; PHOSPHOGLUCOSE ISOMERASE; INORGANIC POLYPHOSPHATE; DNA; RESISTANCE; HOMOLOGS; PROTEIN; RECOGNITION; METABOLISM; MOLLICUTES;
D O I
10.1111/1751-7915.12384
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The experimental design of a minimal synthetic genome revealed the presence of a large number of genes without ascribed function, in part because the abstract laws of life must be implemented within ad hoc material contraptions. Creating a function needs recruitment of some pre-existing structure and this reveals kludges in their set-up and history. Here, we show that looking for functions as an engineer would help in discovery of a significant number of those, proposed together with conceptual handles allowing investigators to pursue this endeavour in other contexts.
引用
收藏
页码:530 / 540
页数:11
相关论文
共 63 条
[1]   From essential to persistent genes: a functional approach to constructing synthetic life [J].
Acevedo-Rocha, Carlos G. ;
Fang, Gang ;
Schmidt, Markus ;
Ussery, David W. ;
Danchin, Antoine .
TRENDS IN GENETICS, 2013, 29 (05) :273-279
[2]   Inorganic polyphosphate in the microbial world. Emerging roles for a multifaceted biopolymer [J].
Albi, Tomas ;
Serrano, Aurelio .
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 2016, 32 (02) :1-12
[3]   YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops [J].
Baird, Nathan J. ;
Zhang, Jinwei ;
Hamma, Tomoko ;
Ferre-D'Amare, Adrian R. .
RNA, 2012, 18 (04) :759-770
[4]   The CRISPR Conundrum [J].
Bates, Mary .
IEEE PULSE, 2016, 7 (02) :17-21
[5]   CodY-Mediated Regulation of Guanosine Uptake in Bacillus subtilis [J].
Belitsky, Boris R. ;
Sonenshein, Abraham L. .
JOURNAL OF BACTERIOLOGY, 2011, 193 (22) :6276-6287
[6]  
Binder PM, 2011, EMBO REP, V12, P495, DOI 10.1038/embor.2011.83
[7]   Isoaspartate residues dramatically influence substrate recognition and turnover by proteases [J].
Boehme, Livia ;
Baer, Joachim Wolfgang ;
Hoffmann, Torsten ;
Manhart, Susanne ;
Ludwig, Hans-Henning ;
Rosche, Fred ;
Demuth, Hans-Ulrich .
BIOLOGICAL CHEMISTRY, 2008, 389 (08) :1043-1053
[8]   The ABC-F protein EttA gates ribosome entry into the translation elongation cycle [J].
Boel, Gregory ;
Smith, Paul C. ;
Ning, Wei ;
Englander, Michael T. ;
Chen, Bo ;
Hashem, Yaser ;
Testa, Anthony J. ;
Fischer, Jeffrey J. ;
Wieden, Hans-Joachim ;
Frank, Joachim ;
Gonzalez, Ruben L., Jr. ;
Hunt, John F. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2014, 21 (02) :143-+
[9]   Exploring the Existence of Lipid Rafts in Bacteria [J].
Bramkamp, Marc ;
Lopez, Daniel .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2015, 79 (01) :81-100
[10]   REXO2 Is an Oligoribonuclease Active in Human Mitochondria [J].
Bruni, Francesco ;
Gramegna, Pasqua ;
Oliveira, Jorge M. A. ;
Lightowlers, Robert N. ;
Chrzanowska-Lightowlers, Zofia M. A. .
PLOS ONE, 2013, 8 (05)