Multiallelic and multilocus simple sequence repeats (SSRs) to assess the genetic diversity of aSalixspp. germplasm collection

被引:6
作者
Carletti, Giorgia [1 ]
Cattivelli, Luigi [2 ]
Vietto, Lorenzo [1 ]
Nervo, Giuseppe [1 ]
机构
[1] Council Agr Res & Econ CREA Res Ctr Forestry & Wo, Res Ctr Forestry & Wood, Casale Monferrato, AL, Italy
[2] Council Agr Res & Econ CREA, Res Ctr Genom & Bioinformat, Fiorenzuola Darda, PC, Italy
关键词
Microsatellites; Salix; Genetic diversity; MICROSATELLITE MARKERS; WILLOW; INFERENCE;
D O I
10.1007/s11676-019-00913-0
中图分类号
S7 [林业];
学科分类号
0829 ; 0907 ;
摘要
SalixL. (willow) is the largest genus of the family Salicaceae and plays an important role in riparian habitats, wetlands and in shrub tundra. Due to the different implications for the species belonging to this family, it is fundamental to identify molecular tools characterizing relevant clones. A set of six multilocus and multiallelic simple sequence repeat (SSRs) markers are presented, leading to 390 polymorphic fragments considered as single dominant markers and able to discriminate successfully 92S. albaL. from 24Salixspp. The polymorphic fragments have been used to perform genetic diversity studies, and to investigate population structures and cluster analysis in a germplasm collection. The results highlight the capability of the six SSRs to be powerful genetic resources in applied forestry research, both to distinguishS. albaclones fromSalixspp. and to perform genetic population studies for breeding programs.
引用
收藏
页码:263 / 271
页数:9
相关论文
共 23 条
  • [1] Argus G.W., 1997, SYSTEMATIC BOT MONOG, V52, P1, DOI [10.2307/25096638, DOI 10.2307/25096638]
  • [2] Argus GW, 2010, FLORA N AM
  • [3] Linkage mapping in tetraploid willows:: segregation of molecular markers and estimation of linkage phases support an allotetraploid structure for Salix alba x Salix fragilis interspecific hybrids
    Barcaccia, G
    Meneghetti, S
    Albertini, E
    Triest, L
    Lucchin, M
    [J]. HEREDITY, 2003, 90 (02) : 169 - 180
  • [4] Microsatellite markers for diverse Salix species
    Barker, JHA
    Pahlich, A
    Trybush, S
    Edwards, KJ
    Karp, A
    [J]. MOLECULAR ECOLOGY NOTES, 2003, 3 (01): : 4 - 6
  • [5] BOTSTEIN D, 1980, AM J HUM GENET, V32, P314
  • [6] CHARACTERIZATION OF 23 POLYMORPHIC SSR MARKERS IN SALIX HUMBOLDTIANA (SALICACEAE) USING NEXT-GENERATION SEQUENCING AND CROSS-AMPLIFICATION FROM RELATED SPECIES
    Bozzi, Jorge A.
    Liepelt, Sascha
    Ohneiser, Sebastian
    Gallo, Leonardo A.
    Marchelli, Paula
    Leyer, Ilona
    Ziegenhagen, Birgit
    Mengel, Christina
    [J]. APPLICATIONS IN PLANT SCIENCES, 2015, 3 (04):
  • [7] STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
    Earl, Dent A.
    vonHoldt, Bridgett M.
    [J]. CONSERVATION GENETICS RESOURCES, 2012, 4 (02) : 359 - 361
  • [8] Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    Evanno, G
    Regnaut, S
    Goudet, J
    [J]. MOLECULAR ECOLOGY, 2005, 14 (08) : 2611 - 2620
  • [9] Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
    Excoffier, Laurent
    Lischer, Heidi E. L.
    [J]. MOLECULAR ECOLOGY RESOURCES, 2010, 10 (03) : 564 - 567
  • [10] Falush D, 2003, GENETICS, V164, P1567