A transferable coarse-grained model for hydrogen-bonding liquids

被引:36
作者
Golubkov, Pavel A. [1 ]
Wu, Johnny C. [1 ]
Ren, Pengyu [1 ]
机构
[1] Univ Texas Austin, Dept Biomed Engn, Austin, TX 78712 USA
关键词
D O I
10.1039/b715841f
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present here a recent development of a generalized coarse- grained model for use in molecular simulations. In this model, interactions between coarse- grained particles consist of both van der Waals and explicit electrostatic components. As a result, the coarse- grained model offers the transferability that is lacked by most current effective- potential based approaches. The previous center- of- mass framework ( P. A. Golubkov and P. Ren, J. Chem. Phys., 2006, 125, 64103) is generalized here to include arbitrary off- center interaction sites for both Gay- Berne and multipoles. The new model has been applied to molecular dynamic simulations of neat methanol liquid. By placing a single point multipole at the oxygen atom rather than at the center of mass of methanol, there is a significant improvement in the ability to capture hydrogen- bonding. The critical issue of transferability of the coarse- grained model is verified on methanol - water mixtures, using parameters derived from neat liquids without any modification. The mixture density and internal energy from coarse- grained molecular dynamics simulations show good agreement with experimental measurements, on a par with what has been obtained from more detailed atomic models. By mapping the dynamics trajectory from the coarse- grained simulation into the all- atom counterpart, we are able to investigate atomic- level structure and interaction. Atomic radial distribution functions of neat methanol, neat water and mixtures compare favorably to experimental measurements. Furthermore, hydrogen- bonded 6- and 7- molecule chains of water and methanol observed in the mixture are in agreement with previous atomic simulations.
引用
收藏
页码:2050 / 2057
页数:8
相关论文
共 39 条
[1]  
Allen M. P., 2009, Computer Simulation of Liquids
[2]  
[Anonymous], 1961, J CHEM ENG DATA, DOI [DOI 10.1021/JE60011A015, DOI 10.1021/JE60011A026]
[3]   Nuclear magnetic resonance and molecular dynamics study of methanol up to the supercritical region [J].
Asahi, N ;
Nakamura, Y .
JOURNAL OF CHEMICAL PHYSICS, 1998, 109 (22) :9879-9887
[4]   Molecular dipoles and tilted smectic formation: A Monte Carlo study [J].
Berardi, R ;
Orlandi, S ;
Zannoni, C .
PHYSICAL REVIEW E, 2003, 67 (04) :14-417081
[5]   Dipole strength effects on the polymorphism in smectic A mesophases [J].
Berardi, R ;
Orlandi, S ;
Photinos, DJ ;
Vanakaras, AG ;
Zannoni, C .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2002, 4 (05) :770-777
[6]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[7]   Emerging methods for multiscale simulation of biomolecular systems [J].
Chu, J. -W. ;
Ayton, G. S. ;
Izvekov, S. ;
Voth, G. A. .
MOLECULAR PHYSICS, 2007, 105 (2-3) :167-175
[8]   The multiscale challenge for biomolecular systems: coarse-grained modeling [J].
Chu, J. -W. ;
Izvekov, S. ;
Voth, G. A. .
MOLECULAR SIMULATION, 2006, 32 (3-4) :211-218
[9]   Extension and generalization of the Gay-Berne potential [J].
Cleaver, DJ ;
Care, CM ;
Allen, MP ;
Neal, MP .
PHYSICAL REVIEW E, 1996, 54 (01) :559-567
[10]   DIFFUSION-COEFFICIENTS OF METHANOL AND WATER AND THE MUTUAL DIFFUSION-COEFFICIENT IN METHANOL WATER SOLUTIONS AT 278-K AND 298-K [J].
DERLACKI, ZJ ;
EASTEAL, AJ ;
EDGE, AVJ ;
WOOLF, LA ;
ROKSANDIC, Z .
JOURNAL OF PHYSICAL CHEMISTRY, 1985, 89 (24) :5318-5322