Next-generation sequencing yields the complete mitochondrial genome of Pterygoplichthys pardalis (Loricariidae; Siluriformes)

被引：1

作者：

Xia, Wangxiao ^{[1
]}

Jiang, Hui ^{[2
]}

Ge, Jinghao ^{[1
]}

Cheng, Jianghong ^{[1
]}

Liu, Peng ^{[1
]}

Gou, Xingchun ^{[1
]}

机构：

[1] Xian Med Univ, Inst Basic Translat Med, Shaanxi Key Lab Brain Disorders, Xian, Peoples R China

[2] Zhejiang Ocean Univ, Natl Engn Lab Marine Germplasm Resources Explorat, Zhoushan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 11期

关键词：

Catfish; Loricarioidei; mitogenome; molecular data; phylogeny; TELEOSTEI; CALLICHTHYIDAE;

D O I：

10.1080/23802359.2021.1959447

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this study, we report the complete mitochondrial genome of Pterygoplichthys pardalis has derived by next-generation sequencing. The complete mitochondrial genome of P. pardalis contains 16,425 bp encompassing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region (D-loop). The base composition is A 31.79%, C 26.89%, G 14.63%, and T 26.69%, and its gene arrangement is consistent with mitochondrial genomes derived from other representatives of Loricariidae. A phylogenetic tree of 24 Loricariidae species constructed based on the 13 coding genes shows that P. pardalis is clustered with other Pterygoplichthys genus. It suggests that the molecular classification results confirm its external morphological characteristics. These results have reference value for the further study of phylogenetic relationship, taxonomic classification, and phylogeography of Loricariidae.

引用

页码：3209 / 3211

页数：3

共 21 条

[1]

[Anonymous], 2010, J APPL SCI ENV SANIT

[2] MITOS: Improved de novo metazoan mitochondrial genome annotation [J].

Bernt, Matthias ;

Donath, Alexander ;

Juehling, Frank ;

Externbrink, Fabian ;

Florentz, Catherine ;

Fritzsch, Guido ;

Puetz, Joern ;

Middendorf, Martin ;

Stadler, Peter F. .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319

[3] Assessment of the invasive catfish Pterygoplichthys pardalis (Castelnau, 1855) in Thailand: ecological impacts and biological control alternatives [J].

Chaichana, Ratcha ;

Jongphadungkiet, Sirapat .

TROPICAL ZOOLOGY, 2012, 25 (04) :173-182

[4]

Chan PP, 2019, METHODS MOL BIOL, V1962, P1, DOI 10.1007/978-1-4939-9173-0_1

[5] Characterization of dermal plates from armored catfish Pterygoplichthys pardalis reveals sandwich-like nanocomposite structure [J].

Ebenstein, Donna ;

Calderon, Carlos ;

Troncoso, Omar P. ;

Torres, Fernando G. .

JOURNAL OF THE MECHANICAL BEHAVIOR OF BIOMEDICAL MATERIALS, 2015, 45 :175-182

[6] Feast to famine: The effects of food quality and quantity on the gut structure and function of a detritivorous catfish (Teleostei: Loricariidae) [J].

German, Donovan P. ;

Neuberger, Daniel T. ;

Callahan, Meaghan N. ;

Lizardo, Norma R. ;

Evans, David H. .

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 2010, 155 (03) :281-293

[7]

Hall T.A., 1999, Nucl. Acids Symp. Ser., V41, P95, DOI [10.1021/bk-1999-0734.ch008, DOI 10.1021/BK-1999-0734.CH008]

[8]

Hoover JJ., 2004, Aquat Nuis Species Res Progr, V4, P1, DOI DOI 10.21236/ADA422109

[9] The complete mitochondrial genome of Thryssa hamiltonii (Eniraulinae, Engranlidae, Clupcoidei) and phylogenetic studies of Clupeoidei [J].

Jiang, Hui ;

Lu, Zhenming ;

Liu, Liqing ;

Liu, Bingjian ;

Gong, Li .

MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01) :110-111

[10] The complete mitochondrial genome of Sardinella lemuru (Clupeinae, Clupeidae, Clupeoidei) and phylogenetic studies of Clupeoidei [J].

Jiang, Hui ;

Gong, Li ;

Liu, Liqin ;

Liu, Bingjian ;

Lu, Zhenming .

MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01) :50-52

← 1 2 3 →