An Optimized System for Multiple Sequence Alignment

被引：2

作者：

Yilmaz, Caglar ^{[1
]}

Gok, Mustafa ^{[2
]}

机构：

[1] Cukurova Univ Balcali, Dept Comp Engn, TR-01330 Balcali, Turkey

[2] Cukurova Univ Balcali, Dept Elect & Elect Engn, TR-01330 Balcali, Turkey

来源：

2009 INTERNATIONAL CONFERENCE ON RECONFIGURABLE COMPUTING AND FPGAS | 2009年

关键词：

DESIGNS; CLUSTAL;

D O I：

10.1109/ReConFig.2009.82

中图分类号：

TP3 [计算技术、计算机技术];

学科分类号：

0812 ;

摘要：

Multiple sequence alignment (MSA) is one of the essential operations for identifying functional and structural relations among proteins. The execution of an MSA algorithm requires high-performance platforms. This paper presents a hardware system that speeds up the popular MSA software ClustalW. The proposed design performs the computation of the most time consuming step of the ClustalW. Test results show that the proposed hardware increases the performance of this step up to 85 times.

引用

页码：178 / +

页数：3

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