Most wetlands of the Mississippi deltaic plain are isolated from riverine input due to flood control levees along the Mississippi River. These levees have altered hydrology and ecology and are a primary cause of massive wetland loss in the delta. River water is being reintroduced into coastal basins as part of a large-scale ecological engineering effort to restore the delta. We quantified freshwater, nitrogen, and phosphorus inputs to the Breton Sound Estuary for three climatically different years (2000, 2001, and 2002). Water budgets included precipitation, potential evapotranspiration, the diversion, stormwater pumps, and ground-water. Precipitation contributed 48-57% of freshwater input, while the diversion accounted for 33-48%. Net groundwater input accounted for less than 0.05% of freshwater inputs. Inputs of ammonium (NH4-N), nitrate (NO3-N), total nitrogen (TN), and total phosphorus (TP) were determined for each of the water sources. Atmospheric deposition was the most important input of NH4-N (57-62% or 1.44 x 10(5)-2.32 x 10(5) kg yr(-1)) followed by the diversion. The diversion was the greatest source of NO3-N (67-83%,7.78 x 10(5)-1.64 x 106 kg yr(-1) 1) and TN (60-71%). The diversion contributed 41-60% of TP input (1.17 x 10(5)-2.32 x 10(5) kg yr(-1)). Annual loading rates of NH4-N and NO3-N were 0.17-0.27 and 1.2-2.3 g N m(-2) yr(-1), respectively, for the total basin indicating strong retention of nitrogen in the basin. Nitrogen retention through denitrification and burial was estimated for the upper basin. (c) 2008 Elsevier B.V. All rights reserved.