The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations

被引:27
作者
Kalli, Antreas C. [1 ]
Rog, Tomasz [2 ]
Vattulainen, Ilpo [2 ,3 ]
Campbell, Iain D. [1 ]
Sansom, Mark S. P. [1 ]
机构
[1] Univ Oxford, Dept Biochem, S Parks Rd, Oxford OX1 3QU, England
[2] Tampere Univ Technol, Dept Phys, POB 692, FIN-33101 Tampere, Finland
[3] Univ Southern Denmark, MEMPHYS Ctr Biomembrane Phys, DK-5230 Odense M, Denmark
基金
欧洲研究理事会; 英国惠康基金; 芬兰科学院;
关键词
Integrin; Talin; Molecular dynamics simulations; Lipid diffusion; ALPHA-IIB-BETA-3 TRANSMEMBRANE COMPLEX; LIPID-PROTEIN INTERACTIONS; GROWTH-FACTOR RECEPTOR; INSIDE-OUT ACTIVATION; MODEL MEMBRANES; MULTISCALE SIMULATIONS; ANGSTROM RESOLUTION; LATERAL DIFFUSION; CRYSTAL-STRUCTURE; TYROSINE KINASES;
D O I
10.1007/s00232-016-9908-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Integrins are heterodimeric (alpha beta) cell surface receptors that are potential therapeutic targets for a number of diseases. Despite the existence of structural data for all parts of integrins, the structure of the complete integrin receptor is still not available. We have used available structural data to construct a model of the complete integrin receptor in complex with talin F2-F3 domain. It has been shown that the interactions of integrins with their lipid environment are crucial for their function but details of the integrin/lipid interactions remain elusive. In this study an integrin/talin complex was inserted in biologically relevant bilayers that resemble the cell plasma membrane containing zwitterionic and charged phospholipids, cholesterol and sphingolipids to study the dynamics of the integrin receptor and its effect on bilayer structure and dynamics. The results of this study demonstrate the dynamic nature of the integrin receptor and suggest that the presence of the integrin receptor alters the lipid organization between the two leaflets of the bilayer. In particular, our results suggest elevated density of cholesterol and of phosphatidylserine lipids around the integrin/talin complex and a slowing down of lipids in an annulus of similar to 30 around the protein due to interactions between the lipids and the integrin/talin F2-F3 complex. This may in part regulate the interactions of integrins with other related proteins or integrin clustering thus facilitating signal transduction across cell membranes.
引用
收藏
页码:337 / 351
页数:15
相关论文
共 50 条
  • [11] Molecular dynamics simulations to the bidirectional adhesion signaling pathway of integrin αVβ3
    Kulke, Martin
    Langel, Walter
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2020, 88 (05) : 679 - 688
  • [12] Multidrug Resistance and Efflux Pumps: Insights from Molecular Dynamics Simulations
    Collu, Francesca
    Cascella, Michele
    CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2013, 13 (24) : 3165 - 3183
  • [13] Nanocellulose-membrane contacts, insights from Molecular Dynamics simulations
    Gurtovenko, Andrey A.
    Kartunnen, Mikko
    BIOPHYSICAL REVIEWS, 2021, 13 (06) : 1504 - 1505
  • [14] Interaction of Counterions with Subtilisin in Acetonitrile: Insights from Molecular Dynamics Simulations
    Lousa, Diana
    Cianci, Michele
    Helliwell, John R.
    Halling, Peter J.
    Baptista, Antonio M.
    Soares, Claudio M.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (20) : 5838 - 5848
  • [15] Molecular Dynamics Simulations of Forced Unbending of Integrin αVβ3
    Chen, Wei
    Lou, Jizhong
    Hsin, Jen
    Schulten, Klaus
    Harvey, Stephen C.
    Zhu, Cheng
    PLOS COMPUTATIONAL BIOLOGY, 2011, 7 (02)
  • [16] Molecular dynamics simulations of pore formation in stretched phospholipid/cholesterol bilayers
    Shigematsu, Taiki
    Koshiyama, Kenichiro
    Wada, Shigeo
    CHEMISTRY AND PHYSICS OF LIPIDS, 2014, 183 : 43 - 49
  • [17] pH effects on the structural dynamics of cutinase from Trichoderma reesei: insights from molecular dynamics simulations
    Duan, Mei Lin
    Liu, Lin
    Du, Juan
    Yao, Xiao Jun
    MOLECULAR BIOSYSTEMS, 2015, 11 (11) : 3149 - 3155
  • [18] Phosphorylation of the arginine/serine repeats of lamin B receptor by SRPK1-Insights from molecular dynamics simulations
    Sellis, Diamantis
    Drosou, Victoria
    Vlachakis, Dimitrios
    Voukkalis, Nikolas
    Giannakouros, Thomas
    Vlassi, Metaxia
    BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2012, 1820 (01): : 44 - 55
  • [19] Effects of stripy surfaces with intervals on the coalescence dynamics of nanodroplets: Insights from molecular dynamics simulations
    Li, Tao
    Xia, Yujie
    Zhang, Lishu
    Zhang, Xingfan
    Fu, Chengrui
    Jiang, Yanyan
    Li, Hui
    APPLIED SURFACE SCIENCE, 2019, 481 : 951 - 959
  • [20] Structural and mechanistic insights into the oxy form of tyrosinase from molecular dynamics simulations
    Deeth, Robert J.
    Diedrich, Christian
    JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2010, 15 (02): : 117 - 129