HAD, a data bank of heavy-atom binding sites in protein crystals: a resource for use in multiple isomorphous replacement and anomalous scattering

被引:20
作者
Islam, SA
Carvin, D
Sternberg, MJE
Blundell, TL
机构
[1] Imperial Canc Res Fund, Biomol Modelling Lab, London WC2A 3PX, England
[2] Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England
[3] Univ London Birkbeck Coll, Dept Crystallog, London WC1E 7HX, England
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 1998年 / 54卷
关键词
D O I
10.1107/S090744499800715X
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Information on the preparation and characterization of heavy-atom derivatives of protein crystals has been collected, either from the literature or directly from protein crystallographers, and assembled in the form of a heavy-atom data bank (HAD). The data bank contains coordinate data for the heavy-atom positions in a form that is compatible with the crystallographic data in the Brookhaven Protein Data Bank, together with a wealth of information on the crystallization conditions, the nature of the heavy-atom reagent and references to relevant publications. Some statistical information derived from the data bank, such as the most popular heavy-atom derivatives, is also included. The information can be directly accessed and should be useful to protein crystallographers seeking to improve their success in preparing heavy-atom derivatives for the methods of isomorphous replacement and anomalous dispersion. The World Wide Web address of HAD is http://www.icnet.uk/bmm/had.
引用
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页码:1199 / 1206
页数:8
相关论文
共 15 条
[1]  
BERNSTEIN FC, 1977, J MOL BIOL, V112, P534
[2]  
Blake C C, 1968, Adv Protein Chem, V23, P59, DOI 10.1016/S0065-3233(08)60400-3
[3]  
Blundell T. L., 1976, Protein crystallography
[4]   BINDING OF HEAVY-METALS TO PROTEINS [J].
BLUNDELL, TL ;
JENKINS, JA .
CHEMICAL SOCIETY REVIEWS, 1977, 6 (02) :139-171
[5]  
BUDISA N, 1997, J MOL BIOL, V271, P1
[6]  
CARVIN DGA, 1991, ISOMORPHOUS REPLACEM
[7]   THE STRUCTURE OF HAEMOGLOBIN .4. SIGN DETERMINATION BY THE ISOMORPHOUS REPLACEMENT METHOD [J].
GREEN, DW ;
INGRAM, VM ;
PERUTZ, MF .
PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL AND PHYSICAL SCIENCES, 1954, 225 (1162) :287-307
[8]   SELENOMETHIONYL PROTEINS PRODUCED FOR ANALYSIS BY MULTIWAVELENGTH ANOMALOUS DIFFRACTION (MAD) - A VEHICLE FOR DIRECT DETERMINATION OF 3-DIMENSIONAL STRUCTURE [J].
HENDRICKSON, WA ;
HORTON, JR ;
LEMASTER, DM .
EMBO JOURNAL, 1990, 9 (05) :1665-1672
[9]   MULTIPLE HEAVY-ATOM REAGENTS FOR MACROMOLECULAR X-RAY STRUCTURE DETERMINATION - APPLICATION TO THE NUCLEOSOME CORE PARTICLE [J].
OHALLORAN, TV ;
LIPPARD, SJ ;
RICHMOND, TJ ;
KLUG, A .
JOURNAL OF MOLECULAR BIOLOGY, 1987, 194 (04) :705-712
[10]   PROTEIN CRYSTAL-CHEMISTRY OF CHLOROPLATINITE IONS - GENERAL PRINCIPLES AND INTERACTIONS WITH TRIOSE PHOSPHATE ISOMERASE [J].
PETSKO, GA ;
PHILLIPS, DC ;
WILLIAMS, RJP ;
WILSON, IA .
JOURNAL OF MOLECULAR BIOLOGY, 1978, 120 (03) :345-359