A deoxyribozyme-based molecular automaton

被引:457
作者
Stojanovic, MN
Stefanovic, D
机构
[1] Columbia Univ, Dept Med, Div Clin Pharmacol & Expt Therapeut, New York, NY 10032 USA
[2] Univ New Mexico, Farris Engn Ctr 157, Dept Comp Sci, Albuquerque, NM 87131 USA
关键词
D O I
10.1038/nbt862
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We describe a molecular automaton, called MAYA, which encodes a version of the game of tic-tac-toe and interactively competes against a human opponent. The automaton is a Boolean network of deoxyribozymes that incorporates 23 molecular-scale logic gates and one constitutively active deoxyribozyme arrayed in nine wells (3 x 3) corresponding to the game board. To make a move, MAYA carries out an analysis of the input oligonucleotide keyed to a particular move by the human opponent and indicates a move by fluorescence signaling in a response well. The cycle of human player input and automaton response continues until there is a draw or a victory for the automaton. The automaton cannot be defeated because it implements a perfect strategy.
引用
收藏
页码:1069 / 1074
页数:6
相关论文
共 32 条
[1]   Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli [J].
Atkinson, MR ;
Savageau, MA ;
Myers, JT ;
Ninfa, AJ .
CELL, 2003, 113 (05) :597-607
[2]   Chemistry meets computing [J].
Ball, P .
NATURE, 2000, 406 (6792) :118-120
[3]   DNA molecule provides a computing machine with both data and fuel [J].
Benenson, Y ;
Adar, R ;
Paz-Elizur, T ;
Livneh, Z ;
Shapiro, E .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (05) :2191-2196
[4]   Programmable and autonomous computing machine made of biomolecules [J].
Benenson, Y ;
Paz-Elizur, T ;
Adar, R ;
Keinan, E ;
Livneh, Z ;
Shapiro, E .
NATURE, 2001, 414 (6862) :430-434
[5]   Act natural [J].
Benner, SA .
NATURE, 2003, 421 (6919) :118-118
[6]   Solution of a 20-variable 3-SAT problem on a DNA computer [J].
Braich, RS ;
Chelyapov, N ;
Johnson, C ;
Rothemund, PWK ;
Adleman, L .
SCIENCE, 2002, 296 (5567) :499-502
[7]   A DNA ENZYME WITH MG2+-DEPENDENT RNA PHOSPHOESTERASE ACTIVITY [J].
BREAKER, RR ;
JOYCE, GF .
CHEMISTRY & BIOLOGY, 1995, 2 (10) :655-660
[8]   DNA computation [J].
Cox, JC ;
Ellington, AD .
CURRENT BIOLOGY, 2001, 11 (09) :R336-R336
[9]   Integration of logic functions and sequential operation of gates at the molecular-scale [J].
de Silva, AP ;
Dixon, IM ;
Gunaratne, HQN ;
Gunnlaugsson, T ;
Maxwell, PRS ;
Rice, TE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (06) :1393-1394
[10]   A synthetic oscillatory network of transcriptional regulators [J].
Elowitz, MB ;
Leibler, S .
NATURE, 2000, 403 (6767) :335-338