Genome-Wide Identification and Characterization of Caffeic Acid O-Methyltransferase Gene Family in Soybean

被引:23
作者
Zhang, Xu [1 ,2 ]
Chen, Bowei [1 ,2 ]
Wang, Lishan [1 ,2 ]
Ali, Shahid [1 ,2 ]
Guo, Yile [1 ,2 ]
Liu, Jiaxi [1 ,2 ]
Wang, Jiang [1 ,2 ]
Xie, Linan [1 ,2 ]
Zhang, Qingzhu [1 ,3 ]
机构
[1] Northeast Forestry Univ, Coll Life Sci, Harbin 150040, Peoples R China
[2] Northeast Forestry Univ, Coll Life Sci, Minist Educ, Key Lab Saline Alkali Vegetat Ecol Restorat, Harbin 150040, Peoples R China
[3] Northeast Forestry Univ, State Key Lab Tree Genet & Breeding, Harbin 150040, Peoples R China
来源
PLANTS-BASEL | 2021年 / 10卷 / 12期
基金
中国国家自然科学基金;
关键词
COMT; gene family; soybean; different stresses; LIGNIN BIOSYNTHESIS; MOLECULAR-CLONING; EXPRESSION; MELATONIN; DEPOSITION; PLANTCARE; GROWTH; COMT;
D O I
10.3390/plants10122816
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Soybean is one of the most important legumes, providing high-quality protein for humans. The caffeic acid O-methyltransferase (COMT) gene has previously been demonstrated to be a critical gene that regulates lignin production in plant cell walls and plays an important function in plant growth and development. However, the COMT gene family has not been studied in soybeans. In this study, 55 COMT family genes in soybean were identified by phylogenetic analysis and divided into two groups, I and II. The analysis of conserved domains showed that all GmCOMTs genes contained Methyltransferase-2 domains. Further prediction of cis-acting elements showed that GmCOMTs genes were associated with growth, light, stress, and hormonal responses. Eventually, based on the genomic data of soybean under different stresses, the results showed that the expression of GmCOMTs genes was different under different stresses, such as salt and drought stress. This study has identified and characterized the COMT gene family in soybean, which provides an important theoretical basis for further research on the biological functions of COMT genes and promotes revealing the role of GmCOMTs genes under stress resistance.
引用
收藏
页数:18
相关论文
共 63 条
[1]   Biological valorization of low molecular weight lignin [J].
Abdelaziz, Omar Y. ;
Brink, Daniel P. ;
Prothmann, Jens ;
Ravi, Krithika ;
Sun, Mingzhe ;
Garcia-Hidalgo, Javier ;
Sandahl, Margareta ;
Hulteberg, Christian P. ;
Turner, Charlotta ;
Liden, Gunnar ;
Gorwa-Grauslund, Marie F. .
BIOTECHNOLOGY ADVANCES, 2016, 34 (08) :1318-1346
[2]   ExPASy: SIB bioinformatics resource portal [J].
Artimo, Panu ;
Jonnalagedda, Manohar ;
Arnold, Konstantin ;
Baratin, Delphine ;
Csardi, Gabor ;
de Castro, Edouard ;
Duvaud, Severine ;
Flegel, Volker ;
Fortier, Arnaud ;
Gasteiger, Elisabeth ;
Grosdidier, Aurelien ;
Hernandez, Celine ;
Ioannidis, Vassilios ;
Kuznetsov, Dmitry ;
Liechti, Robin ;
Moretti, Sebastien ;
Mostaguir, Khaled ;
Redaschi, Nicole ;
Rossier, Gregoire ;
Xenarios, Ioannis ;
Stockinger, Heinz .
NUCLEIC ACIDS RESEARCH, 2012, 40 (W1) :W597-W603
[3]   MEME SUITE: tools for motif discovery and searching [J].
Bailey, Timothy L. ;
Boden, Mikael ;
Buske, Fabian A. ;
Frith, Martin ;
Grant, Charles E. ;
Clementi, Luca ;
Ren, Jingyuan ;
Li, Wilfred W. ;
Noble, William S. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :W202-W208
[4]   Comparative genomics and evolutionary analyses of the O-methyltransferase gene family in Populus [J].
Barakat, Abdelali ;
Choi, Alex ;
Yassin, Norzawani Buang M. ;
Park, Joseph S. ;
Sun, Zichao ;
Carlson, John E. .
GENE, 2011, 479 (1-2) :37-46
[5]  
Bellaloui N., 2012, Food and Nutrition Sciences, V3, P447
[6]   Lignin biosynthesis [J].
Boerjan, W ;
Ralph, J ;
Baucher, M .
ANNUAL REVIEW OF PLANT BIOLOGY, 2003, 54 :519-546
[7]   CDNA CLONING, SEQUENCE-ANALYSIS AND SEASONAL EXPRESSION OF LIGNIN-BISPECIFIC CAFFEIC ACID 5-HYDROXYFERULIC ACID O-METHYLTRANSFERASE OF ASPEN [J].
BUGOS, RC ;
CHIANG, VLC ;
CAMPBELL, WH .
PLANT MOLECULAR BIOLOGY, 1991, 17 (06) :1203-1215
[8]   Caffeic acid O-methyltransferase is involved in the synthesis of melatonin by methylating N-acetylserotonin in Arabidopsis [J].
Byeon, Yeong ;
Lee, Hyoung Yool ;
Lee, Kyungjin ;
Back, Kyoungwhan .
JOURNAL OF PINEAL RESEARCH, 2014, 57 (02) :219-227
[9]  
Canut H, 2017, METHODS MOL BIOL, V1511, P171, DOI 10.1007/978-1-4939-6533-5_14
[10]   Genome-wide analysis of the lignin toolbox of Eucalyptus grandis [J].
Carocha, Victor ;
Soler, Marcal ;
Hefer, Charles ;
Cassan-Wang, Hua ;
Fevereiro, Pedro ;
Myburg, Alexander A. ;
Paiva, Jorge A. P. ;
Grima-Pettenati, Jacqueline .
NEW PHYTOLOGIST, 2015, 206 (04) :1297-1313