RNA Secondary Structure Alignment Based on an Extended Binary Coding Method

被引：2

作者：

Cao, Zhi ^{[1
]}

Liao, Bo ^{[1
]}

Li, Renfa ^{[1
]}

Luo, Jiawei ^{[1
]}

Zhu, Wen ^{[1
]}

机构：

[1] Hunan Univ, Sch Comp & Commun, Dept Informat, Changsha 410082, Hunan, Peoples R China

来源：

INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY | 2011年 / 111卷 / 05期

关键词：

alignment; RNA secondary structure; coding method; 3-D GRAPHICAL REPRESENTATION; DNA-SEQUENCES; SIMILARITY;

D O I：

10.1002/qua.22464

中图分类号：

O64 [物理化学（理论化学）、化学物理学];

学科分类号：

070304 ; 081704 ;

摘要：

Recently, we proposed a three-dimensional cube representation of RNA secondary structure. An efficient method for mutation analysis has been proposed based on the introduced representation. According to the proposed three-dimensional cube representations, we will introduce an extended binary coding method for RNA secondary structure alignment by converting the structure alignment to sequence alignment. Using our method, the result of structure alignment can be obtained quickly. (C) 2010 Wiley Periodicals, Inc. Int J Quantum Chem 111: 978-982, 2011

引用

页码：978 / 982

页数：5

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