FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

被引：299

作者：

dos Santos, Gilberto ^{[1
]}

Schroeder, Andrew J. ^{[1
]}

Goodman, Joshua L. ^{[2
]}

Strelets, Victor B. ^{[2
]}

Crosby, Madeline A. ^{[1
]}

Thurmond, Jim ^{[2
]}

Emmert, David B. ^{[1
]}

Gelbart, William M. ^{[1
]}

机构：

[1] Harvard Univ, Biol Labs, Cambridge, MA 02138 USA

[2] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA

来源：

NUCLEIC ACIDS RESEARCH | 2015年 / 43卷 / D1期

基金：

英国医学研究理事会; 美国国家卫生研究院;

关键词：

SEQUENCE; GENERATION; BROWSER;

D O I：

10.1093/nar/gku1099

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Release 6, the latest reference genome assembly of the fruit fly Drosophila melanogaster, was released by the Berkeley Drosophila Genome Project in 2014; it replaces their previous Release 5 genome assembly, which had been the reference genome assembly for over 7 years. With the enormous amount of information now attached to the D. melanogaster genome in public repositories and individual laboratories, the replacement of the previous assembly by the new one is a major event requiring careful migration of annotations and genome-anchored data to the new, improved assembly. In this report, we describe the attributes of the new Release 6 reference genome assembly, the migration of FlyBase genome annotations to this new assembly, how genome features on this new assembly can be viewed in FlyBase (http://flybase.org) and how users can convert coordinates for their own data to the corresponding Release 6 coordinates.

引用

页码：D690 / D697

页数：8

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