Characterization of the complete plastid genome of Scutellaria microviolacea (Lamiaceae), a species endemic to Yunnan Province of China

被引：1

作者：

Wang, Yong-Chao ^{[1
]}

Zhang, Zhi-Rong ^{[2
]}

Yan, Li-Jun ^{[1
]}

机构：

[1] Yunnan Normal Univ, Sch Vocat & Tech Educ, 298,121 St, Kunming 650092, Yunnan, Peoples R China

[2] Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming, Yunnan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 05期

基金：

中国国家自然科学基金;

关键词：

Scutellaria microviolacea; endemic species; Lamiaceae; plastid genome; phylogeny;

D O I：

10.1080/23802359.2022.2069521

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The complete plastid genome of Scutellaria microviolacea C. Y. Wu was firstly reported. The full length of the plastid genome was 152,092 bp and comprised of a large single-copy (LSC) region of 84,090 bp, a small single-copy (SSC) region of 17,534 bp, and two inverted repeat regions (IRs) of 25,234 bp. A total of 131 genes were encoded, including 87 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The overall GC content of the S. microviolacea plastid genome was 38.3%. Further phylogenetic analysis based on 18 accessions inferred that the genus Scutellaria can be divided into two clades, and S. microviolacea is evolutionarily close to Scutellaria tsinyunensis. Our study provided essential genetic resources for further studies on the evolution and genetic diversity of the genus Scutellaria and its related taxa.

引用

页码：758 / 760

页数：3

共 13 条

[1]

Doyle JJ., 1987, Phytochem Bull, V19, P11, DOI DOI 10.2307/2419362

[2] GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes [J].

Jin, Jian-Jun ;

Yu, Wen-Bin ;

Yang, Jun-Bo ;

Song, Yu ;

dePamphilis, Claude W. ;

Yi, Ting-Shuang ;

Li, De-Zhu .

GENOME BIOLOGY, 2020, 21 (01)

[3] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[4]

PATON A, 1990, Kew Bulletin, V45, P399, DOI 10.2307/4110512

[5] Two new species of Scutellaria (Lamiaceae) from Thailand and Burma [J].

Paton, Alan ;

Suddee, Somran ;

Bongcheewin, Bhanubong .

KEW BULLETIN, 2016, 71 (01)

[6] PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes [J].

Qu, Xiao-Jian ;

Moore, Michael J. ;

Li, De-Zhu ;

Yi, Ting-Shuang .

PLANT METHODS, 2019, 15 (1)

[7] Phylogenetic relationships in Iranian Scutellaria (Lamiaceae) based on nuclear ribosomal ITS and chloroplast trnL-F DNA data [J].

Safikhani, Keivan ;

Jamzad, Ziba ;

Saeidi, Hojjatollah .

PLANT SYSTEMATICS AND EVOLUTION, 2018, 304 (09) :1077-1089

[8] The genus Scutellaria an ethnopharmacological and phytochemical review [J].

Shang, Xiaofei ;

He, Xirui ;

He, Xiaoying ;

Li, Maoxing ;

Zhang, Ruxue ;

Fan, Pengcheng ;

Zhang, Quanlong ;

Jia, Zhengping .

JOURNAL OF ETHNOPHARMACOLOGY, 2010, 128 (02) :279-313

[9] RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models [J].

Stamatakis, Alexandros .

BIOINFORMATICS, 2006, 22 (21) :2688-2690

[10]

Wick Ryan R, 2015, Bioinformatics, V31, P3350, DOI 10.1093/bioinformatics/btv383

← 1 2 →