Identification, Characterization, and Preliminary X-ray Diffraction Analysis of a Novel Esterase (ScEst) from Staphylococcus chromogenes

被引:2
作者
Hwang, Jisub [1 ,2 ]
Jeon, Sangeun [3 ]
Lee, Min Ju [1 ]
Yoo, Wanki [4 ]
Chang, Juwon [3 ]
Kim, Kyeong Kyu [4 ]
Lee, Jun Hyuck [1 ,2 ]
Do, Hackwon [1 ,2 ]
Kim, T. Doohun [3 ]
机构
[1] Korea Polar Res Inst, Res Unit Cryogen Novel Mat, Incheon 21990, South Korea
[2] Univ Sci & Technol, Dept Polar Sci, Incheon 21990, South Korea
[3] Sookmyung Womens Univ, Grad Sch Gen Studies, Dept Chem, Seoul 04310, South Korea
[4] Sungkyunkwan Univ, Samsung Biomed Res Inst, Dept Mol Cell Biol, Sch Med, Suwon 440746, South Korea
基金
新加坡国家研究基金会;
关键词
carboxylesterase; Staphylococcus chromogenes; X-ray crystallography;
D O I
10.3390/cryst12040546
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
Ester prodrugs can develop novel antibiotics and have potential therapeutic applications against multiple drug-resistant bacteria. The antimicrobial activity of these prodrugs is activated after being cleaved by the esterases produced by the pathogen. Here, novel esterase ScEst originating from Staphylococcus chromogenes NCTC10530, which causes dairy cow mastitis, was identified, characterized, and analyzed using X-ray crystallography. The gene encoding ScEst was cloned into the pVFT1S vector and overexpressed in E. coli. The recombinant ScEst protein was obtained by affinity and size-exclusion purification. ScEst showed substrate preference for the short chain length of acyl derivatives. It was crystallized in an optimized solution composed of 0.25 M ammonium citrate tribasic (pH 7.0) and 20% PEG 3350 at 296 K. A total of 360 X-ray diffraction images were collected at a 1.66 angstrom resolution. ScEst crystal belongs to the space group of P2(1)2(1)2(1) with the unit cell parameters of a = 50.23 angstrom, b = 68.69 angstrom, c = 71.15 angstrom, and alpha = beta = gamma = 90 degrees. Structure refinement after molecular replacement is under progress. Further biochemical studies will elucidate the hydrolysis mechanism of ScEst. Overall, this study is the first to report the functional characterization of an esterase from Staphylococcus chromogenes, which is potentially useful in elaborating its hydrolysis mechanism.
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页数:9
相关论文
共 25 条
[1]   Bacterial lipolytic enzymes: classification and properties [J].
Arpigny, JL ;
Jaeger, KE .
BIOCHEMICAL JOURNAL, 1999, 343 :177-183
[2]  
Elayyan S., 2015, WORLD J PHARM PHARM, V4, P1504, DOI [10.20959/wjpps20158-4933, DOI 10.20959/WJPPS20158-4933]
[3]   Antibiotics and Bacterial Resistance in the 21st Century [J].
Fair, Richard J. ;
Tor, Yitzhak .
PERSPECTIVES IN MEDICINAL CHEMISTRY, 2014, 6 :25-64
[4]   Recent progress in prodrug design strategies based on generally applicable modifications [J].
Hamada, Yoshio .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2017, 27 (08) :1627-1632
[5]   A proposed update for the classification and description of bacterial lipolytic enzymes [J].
Hitch, Thomas C. A. ;
Clavel, Thomas .
PEERJ, 2019, 7
[6]   Antibacterial Prodrugs to Overcome Bacterial Resistance [J].
Jubeh, Buthaina ;
Breijyeh, Zeinab ;
Karaman, Rafik .
MOLECULES, 2020, 25 (07)
[7]   MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms [J].
Kumar, Sudhir ;
Stecher, Glen ;
Li, Michael ;
Knyaz, Christina ;
Tamura, Koichiro .
MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (06) :1547-1549
[8]   Clustal W and clustal X version 2.0 [J].
Larkin, M. A. ;
Blackshields, G. ;
Brown, N. P. ;
Chenna, R. ;
McGettigan, P. A. ;
McWilliam, H. ;
Valentin, F. ;
Wallace, I. M. ;
Wilm, A. ;
Lopez, R. ;
Thompson, J. D. ;
Gibson, T. J. ;
Higgins, D. G. .
BIOINFORMATICS, 2007, 23 (21) :2947-2948
[9]   Microbial esterases and ester prodrugs: An unlikely marriage for combating antibiotic resistance [J].
Larsen, Erik M. ;
Johnson, R. Jeremy .
DRUG DEVELOPMENT RESEARCH, 2019, 80 (01) :33-47
[10]   Crystal Structure and Functional Characterization of an Esterase (EaEST) from Exiguobacterium antarcticum [J].
Lee, Chang Woo ;
Kwon, Sena ;
Park, Sun-Ha ;
Kim, Boo-Young ;
Yoo, Wanki ;
Ryu, Bum Han ;
Kim, Han-Woo ;
Shin, Seung Chul ;
Kim, Sunghwan ;
Park, Hyun ;
Kim, T. Doohun ;
Lee, Jun Hyuck .
PLOS ONE, 2017, 12 (01)