Vibrational spectroscopy by means of first-principles molecular dynamics simulations

被引:56
作者
Ditler, Edward [1 ]
Luber, Sandra [1 ]
机构
[1] Univ Zurich, Dept Chem, Zurich, Switzerland
关键词
ab initio molecular dynamics; infrared; Raman; vibrational spectroscopy; SUM-FREQUENCY GENERATION; AB-INITIO CALCULATION; 2-DIMENSIONAL INFRARED-SPECTROSCOPY; CONSISTENT-FIELD CALCULATIONS; OPTICAL-ACTIVITY SPECTRA; REACTIVE FORCE-FIELD; CIRCULAR-DICHROISM; LIQUID WATER; PROTONATED PEPTIDES; PERTURBATION-THEORY;
D O I
10.1002/wcms.1605
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Vibrational spectroscopy is one of the most important experimental techniques for the characterization of molecules and materials. Spectroscopic signatures retrieved in experiments are not always easy to explain in terms of the structure and dynamics of the studied samples. Computational studies are a crucial tool for helping to understand and predict experimental results. Molecular dynamics simulations have emerged as an attractive method for the simulation of vibrational spectra because they explicitly treat the vibrational motion present in the compound under study, in particular in large and condensed systems, subject to complex intramolecular and intermolecular interactions. In this context, first-principles molecular dynamics (FPMD) has been proven to provide an accurate realistic description of many compounds. This review article summarizes the field of vibrational spectroscopy by means of FPDM and highlights recent advances made such as the simulation of Infrared, vibrational circular dichroism, Raman, Raman optical activity, sum frequency generation, and nonlinear spectroscopies. This article is categorized under: Electronic Structure Theory > Ab Initio Electronic Structure Methods Theoretical and Physical Chemistry > Spectroscopy Molecular and Statistical Mechanics > Molecular Mechanics Electronic Structure Theory > Density Functional Theory
引用
收藏
页数:29
相关论文
共 251 条
[11]   Spectral Signatures of the Pentagonal Water Cluster in Bacteriorhodopsin [J].
Baer, Marcel ;
Mathias, Gerald ;
Kuo, I-Feng W. ;
Tobias, Douglas J. ;
Mundy, Christopher J. ;
Marx, Dominik .
CHEMPHYSCHEM, 2008, 9 (18) :2703-2707
[12]   AB-INITIO CALCULATION OF VIBRATIONAL CIRCULAR-DICHROISM SPECTRA USING GAUGE-INVARIANT ATOMIC ORBITALS [J].
BAK, KL ;
DEVLIN, FJ ;
ASHVAR, CS ;
TAYLOR, PR ;
FRISCH, MJ ;
STEPHENS, PJ .
JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (41) :14918-14922
[13]   Well-tempered metadynamics: A smoothly converging and tunable free-energy method [J].
Barducci, Alessandro ;
Bussi, Giovanni ;
Parrinello, Michele .
PHYSICAL REVIEW LETTERS, 2008, 100 (02)
[14]   QUANTUM-STATISTICAL MONTE-CARLO METHOD - PATH INTEGRALS WITH BOUNDARY-CONDITIONS [J].
BARKER, JA .
JOURNAL OF CHEMICAL PHYSICS, 1979, 70 (06) :2914-2918
[15]  
Bec K.B., 2021, Near Infrared Spectroscopy, P83, DOI [10.1007/978-981-15-8648-4_5, DOI 10.1007/978-981-15-8648-4_5]
[16]  
Becker O. M., 2001, Computational Biochemistry and Biophysics, DOI DOI 10.1201/9780203903827/COMPUTATIONAL-BIOCHEMISTRY-BIOPHYSICSALEXANDER-MACKERELL-JR-OREN-BECKER-MASAKATSU-WATANABE-BENOITROUX
[17]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[18]   Glucose in dry and moist ionic liquid: vibrational circular dichroism, IR, and possible mechanisms [J].
Blasius, Jan ;
Elfgen, Roman ;
Holloczki, Oldamur ;
Kirchner, Barbara .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2020, 22 (19) :10726-10737
[19]  
Born M, 1927, ANN PHYS-BERLIN, V84, P0457
[20]   Proof of Adiabatic law [J].
Born, M. ;
Fock, V. .
ZEITSCHRIFT FUR PHYSIK, 1928, 51 (3-4) :165-180