A new approach for multi-omic data integration

被引:0
|
作者
Zuo, Yiming [1 ,2 ]
Yu, Guoqiang [2 ]
Zhang, Chi [1 ]
Ressom, Habtom W. [1 ]
机构
[1] Georgetown Univ, Lombardi Comprehens Canc Ctr, Washington, DC 20057 USA
[2] Virginia Polytech Inst & State Univ, Dept Elect & Comp Engn, Arlington, VA USA
关键词
Multi-omic data integration; regularized canonical correlation analysis; graphical lasso; LIPOPROTEIN-LIPASE; IDENTIFICATION; SELECTION;
D O I
暂无
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Recent technological advances have enabled the generation of various omic data (e.g., genomics, proteomics, metabolomics and glycomics) in a high-throughput manner. The integration of multi-omic data sets is desirable to unravel the complexity of a biological system. In this paper, we propose a new approach to investigate both inter and intra relationships for multi-omic data sets by using regularized canonical correlation analysis and graphical lasso. The application of this novel approach on real multi-omic data sets helps identify hub proteins and their neighbors that may be missed by typical statistical analysis to serve as biomarker candidates. Also, the integration of data from various cellular components (i.e., proteins, metabolites and glycans) offers the potential to discover more reliable biomarker candidates for complex disease.
引用
收藏
页数:4
相关论文
共 50 条
  • [31] What are the merits of a multi-omic approach to diagnosing PTSD?
    Baethge, Christopher
    MOLECULAR PSYCHIATRY, 2020, 25 (12) : 3127 - 3128
  • [32] Necrotizing Enterocolitis: A Multi-omic Approach and the Role of the Microbiome
    Josef Neu
    Digestive Diseases and Sciences, 2020, 65 : 789 - 796
  • [33] Necrotizing Enterocolitis: A Multi-omic Approach and the Role of the Microbiome
    Neu, Josef
    DIGESTIVE DISEASES AND SCIENCES, 2020, 65 (03) : 789 - 796
  • [34] Uncovering the gene regulatory network of type 2 diabetes through multi-omic data integration
    Liu, Jiachen
    Liu, Shenghua
    Yu, Zhaomei
    Qiu, Xiaorui
    Jiang, Rundong
    Li, Weizheng
    JOURNAL OF TRANSLATIONAL MEDICINE, 2022, 20 (01)
  • [35] Uncovering the gene regulatory network of type 2 diabetes through multi-omic data integration
    Jiachen Liu
    Shenghua Liu
    Zhaomei Yu
    Xiaorui Qiu
    Rundong Jiang
    Weizheng Li
    Journal of Translational Medicine, 20
  • [36] Multi-omic integration of DNA methylation and gene expression data reveals molecular vulnerabilities in glioblastoma
    Santamarina-Ojeda, Pablo
    Tejedor, Juan Ramon
    Perez, Raul F.
    Lopez, Virginia
    Roberti, Annalisa
    Mangas, Cristina
    Fernandez, Agustin F.
    Fraga, Mario F. F.
    MOLECULAR ONCOLOGY, 2023, 17 (09) : 1726 - 1743
  • [37] Multiplex methods provide effective integration of multi-omic data in genome-scale models
    Angione, Claudio
    Conway, Max
    Lio, Pietro
    BMC BIOINFORMATICS, 2016, 17
  • [38] Multi-omic data integration for the study of production, carcass, and meat quality traits in Nellore cattle
    de Novais, Francisco Jose
    Yu, Haipeng
    Cesar, Aline Silva Mello
    Momen, Mehdi
    Poleti, Mirele Daiana
    Petry, Bruna
    Mourao, Gerson Barreto
    Regitano, Luciana Correia de Almeida
    Morota, Gota
    Coutinho, Luiz Lehmann
    FRONTIERS IN GENETICS, 2022, 13
  • [39] AMEND 2.0: module identification and multi-omic data integration with multiplex-heterogeneous graphs
    Boyd, Samuel S.
    Slawson, Chad
    Thompson, Jeffrey A.
    BMC BIOINFORMATICS, 2025, 26 (01):
  • [40] Multi-omic Data Integration Elucidates Synechococcus Adaptation Mechanisms to Fluctuations in Light Intensity and Salinity
    Vijayakumar, Supreeta
    Angione, Claudio
    BIOINFORMATICS AND BIOMEDICAL ENGINEERING, IWBBIO 2017, PT I, 2017, 10208 : 220 - 229