Chinese hamster genome database: An online resource for the CHO community at www.CHOgenome.org

被引：64
作者：
Hammond, Stephanie [1 ,2 ]
Kaplarevic, Mihailo [2 ]
Borth, Nicole [3 ,4 ]
Betenbaugh, Michael J. [5 ]
Lee, Kelvin H. [1 ,2 ]
机构：
[1] Univ Delaware, Dept Chem Engn, Newark, DE 19716 USA
[2] Univ Delaware, Delaware Biotechnol Inst, Newark, DE 19711 USA
[3] Univ Nat Resources & Life Sci, Dept Biotechnol, Vienna, Austria
[4] ACIB GmbH, Austrian Ctr Ind Biotechnol, Graz, Austria
[5] Johns Hopkins Univ, Dept Chem & Biomol Engn, Baltimore, MD USA
来源：
BIOTECHNOLOGY AND BIOENGINEERING | 2012年 / 109卷 / 06期
基金：
美国国家科学基金会;
关键词：
Chinese hamster ovary cell; CHO genome; database; SOMATIC MAMMALIAN-CELLS; PROTEIN THERAPEUTICS; SEQUENCE; ONTOLOGY; GENETICS; MUTANTS;
D O I：
10.1002/bit.24374
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
The Chinese hamster genome database () is an online resource for the Chinese hamster (Cricetulus griseus) and Chinese hamster ovary (CHO) cell communities. CHO cells are important for biomedical research and are widely used in industry for the production of biopharmaceuticals. The genome of the CHO-K1 cell line was recently sequenced and the CHO community has developed an online resource to facilitate accessibility of the genomic data and the development of genomic tools. Biotechnol. Bioeng. 2012; 109:13531356. (c) 2011 Wiley Periodicals, Inc.
引用
收藏
页码：1353 / 1356
页数：4
相关论文
共 23 条
[1]  
[Anonymous], DATABASE
[2]   Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing [J].
Becker, Jennifer ;
Hackl, Matthias ;
Rupp, Oliver ;
Jakobi, Tobias ;
Schneider, Jessica ;
Szczepanowski, Rafael ;
Bekel, Thomas ;
Borth, Nicole ;
Goesmann, Alexander ;
Grillari, Johannes ;
Kaltschmidt, Christian ;
Noll, Thomas ;
Puehler, Alfred ;
Tauch, Andreas ;
Brinkrolf, Karina .
JOURNAL OF BIOTECHNOLOGY, 2011, 156 (03) :227-235
[3]  
Benson DA, 2013, NUCLEIC ACIDS RES, V41, pD36, DOI [10.1093/nar/gkn723, 10.1093/nar/gkp1024, 10.1093/nar/gkw1070, 10.1093/nar/gkr1202, 10.1093/nar/gkx1094, 10.1093/nar/gkl986, 10.1093/nar/gkq1079, 10.1093/nar/gks1195, 10.1093/nar/gkg057]
[4]   Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencing [J].
Birzele, Fabian ;
Schaub, Jochen ;
Rust, Werner ;
Clemens, Christoph ;
Baum, Patrick ;
Kaufmann, Hitto ;
Weith, Andreas ;
Schulz, Torsten W. ;
Hildebrandt, Tobias .
NUCLEIC ACIDS RESEARCH, 2010, 38 (12) :3999-4010
[5]   The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics [J].
Blake, Judith A. ;
Bult, Carol J. ;
Kadin, James A. ;
Richardson, Joel E. ;
Eppig, Janan T. .
NUCLEIC ACIDS RESEARCH, 2011, 39 :D842-D848
[6]   AmiGO: online access to ontology and annotation data [J].
Carbon, Seth ;
Ireland, Amelia ;
Mungall, Christopher J. ;
Shu, ShengQiang ;
Marshall, Brad ;
Lewis, Suzanna .
BIOINFORMATICS, 2009, 25 (02) :288-289
[7]   Large scale microarray profiling and coexpression network analysis of CHO cells identifies transcriptional modules associated with growth and productivity [J].
Clarke, Colin ;
Doolan, Padraig ;
Barron, Niall ;
Meleady, Paula ;
O'Sullivan, Finbarr ;
Gammell, Patrick ;
Melville, Mark ;
Leonard, Mark ;
Clynes, Martin .
JOURNAL OF BIOTECHNOLOGY, 2011, 155 (03) :350-359
[8]   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering [J].
Hackl, Matthias ;
Jakobi, Tobias ;
Blom, Jochen ;
Doppmeier, Daniel ;
Brinkrolf, Karina ;
Szczepanowski, Rafael ;
Bernhart, Stephan H. ;
Siederdissend, Christian Hoener Zu ;
Bort, Juan A. Hernandez ;
Wieser, Matthias ;
Kunert, Renate ;
Jeffs, Simon ;
Hofacker, Ivo L. ;
Goesmann, Alexander ;
Puehler, Alfred ;
Borth, Nicole ;
Grillari, Johannes .
JOURNAL OF BIOTECHNOLOGY, 2011, 153 (1-2) :62-75
[9]   Genomic sequencing and analysis of a Chinese hamster ovary cell line using Illumina sequencing technology [J].
Hammond, Stephanie ;
Swanberg, Jeffrey C. ;
Kaplarevic, Mihailo ;
Lee, Kelvin H. .
BMC GENOMICS, 2011, 12
[10]  
Jayapal KR, 2007, CHEM ENG PROG, V103, P40
123