Liquid Chromatography-Mass Spectrometry-based Quantitative Proteomics

被引：141

作者：

Xie, Fang ^{[1
]}

Liu, Tao ^{[1
]}

Qian, Wei-Jun ^{[1
]}

Petyuk, Vladislav A. ^{[1
]}

Smith, Richard D. ^{[1
]}

机构：

[1] Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA

来源：

JOURNAL OF BIOLOGICAL CHEMISTRY | 2011年 / 286卷 / 29期

基金：

美国能源部; 美国国家卫生研究院;

关键词：

COMPLEX PROTEIN MIXTURES; ABSOLUTE QUANTIFICATION; SIGNALING NETWORKS; ACCURATE MASS; IN-VIVO; EXPRESSION PROTEOMICS; PEPTIDES; STRATEGY; PLASMA; TAGS;

D O I：

10.1074/jbc.R110.199703

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

LC-MS-based quantitative proteomics has become increasingly applied to a wide range of biological applications due to growing capabilities for broad proteome coverage and good accuracy and precision in quantification. Herein, we review the current LC-MS-based quantification methods with respect to their advantages and limitations and highlight their potential applications.

引用

页码：25443 / 25449

页数：7

共 65 条

[51]

2-W

[52] 18O Labeling:: a tool for proteomics [J].

Stewart, II ;

Thomson, T ;

Figeys, D .

RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2001, 15 (24) :2456-2465

[53] Proteome analyses using accurate mass and elution time peptide tags with capillary LC time-of-flight mass spectrometry [J].

Strittmatter, EF ;

Ferguson, PL ;

Tang, KQ ;

Smith, RD .

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2003, 14 (09) :980-991

[54] Similarity among Tandem Mass Spectra from Proteomic Experiments: Detection, Significance, and Utility [J].

Tabb, DL ;

MacCoss, MJ ;

Wu, CC ;

Anderson, SD ;

Yates, JR .

ANALYTICAL CHEMISTRY, 2003, 75 (10) :2470-2477

[55] Charge competition and the linear dynamic range of detection in electrospray ionization mass spectrometry [J].

Tang, KQ ;

Page, JS ;

Smith, RD .

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2004, 15 (10) :1416-1423

[56] Tandem mass tags:: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS [J].

Thompson, A ;

Schäfer, J ;

Kuhn, K ;

Kienle, S ;

Schwarz, J ;

Schmidt, G ;

Neumann, T ;

Hamon, C .

ANALYTICAL CHEMISTRY, 2003, 75 (08) :1895-1904

[57] Quantitative proteomics in biological research [J].

Wilm, Matthias .

PROTEOMICS, 2009, 9 (20) :4590-4605

[58] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [J].

Wolf-Yadlin, Alejandro ;

Hautaniemi, Sampsa ;

Lauffenburger, Douglas A. ;

White, Forest M. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (14) :5860-5865

[59] Dissection of proteolytic 18O labeling:: Endoprotease-catalyzed 16O-to-18O exchange of truncated peptide substrates [J].

Yao, XD ;

Afonso, C ;

Fenselau, C .

JOURNAL OF PROTEOME RESEARCH, 2003, 2 (02) :147-152

[60] Increased quantitative proteome coverage with 13C/12C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme [J].

Yi, EC ;

Li, XJ ;

Cooke, K ;

Lee, H ;

Raught, B ;

Page, A ;

Aneliunas, V ;

Hieter, P ;

Goodlett, DR ;

Aebersold, R .

PROTEOMICS, 2005, 5 (02) :380-387

← 1 2 3 4 5 6 7 →