MASiVE: Mapping and Analysis of SireVirus Elements in plant genome sequences

被引：14

作者：

Darzentas, N. ^{[1
]}

Bousios, A. ^{[1
]}

Apostolidou, V. ^{[1
]}

Tsaftaris, A. S. ^{[1
,2
]}

机构：

[1] Ctr Res & Technol Hellas, Inst Agrobiotechnol, Thessaloniki 57001, Greece

[2] Aristotle Univ Thessaloniki, Dept Genet & Plant Breeding, GR-54006 Thessaloniki, Greece

来源：

BIOINFORMATICS | 2010年 / 26卷 / 19期

关键词：

LTR RETROTRANSPOSONS; EFFICIENT; PROGRAM;

D O I：

10.1093/bioinformatics/btq454

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

We present MASiVE, an expertly built tool for the large-scale, yet sensitive and highly accurate, discovery, preliminary analysis and insertion age estimation of intact Sirevirus LTR-retrotransposons in plant genomic sequences. Validation was based on the recently available and annotated large maize chromosome one. Results show a considerable improvement in the annotation of Sireviruses, and support our approach as an important addition to the bioinformatics toolbox of plant biologists.

引用

页码：2452 / 2454

页数：3

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