In mammals, the peroxisome proliferator-activated receptor ( PPAR). coactivator-1 (PGC-1) family members and their binding partners orchestrate remodelling in response to diverse challenges such as diet, temperature and exercise. In this study, we exposed goldfish to three temperatures ( 4, 20 and 35 degrees C) and to three dietary regimes ( food deprivation, low fat and high fat) and examined the changes in mitochondrial enzyme activities and transcript levels for metabolic enzymes and their genetic regulators in red muscle, white muscle, heart and liver. When all tissues and conditions were pooled, there were significant correlations between the mRNA for the PGC-1 coactivators ( both alpha and beta) and mitochondrial transcripts ( citrate synthase), metabolic gene regulators including PPAR alpha, PPAR beta and nuclear respiratory factor-1 (NRF-1). PGC-1 beta was the better predictor of the NRF-1 axis, whereas PGC-1 alpha was the better predictor of the PPAR axis (PPAR alpha, PPAR beta, medium chain acyl CoA dehydrogenase). In contrast to these intertissue/developmental patterns, the response of individual tissues to physiological stressors displayed no correlations between mRNA for PGC-1 family members and either the NRF-1 or PPAR axes. For example, in skeletal muscles, low temperature decreased PGC-1 alpha transcript levels but increased mitochondrial enzyme activities ( citrate synthase and cytochrome oxidase) and transcripts for COX IV and NRF-1. These results suggest that in goldfish, as in mammals, there is a regulatory relationship between (i) NRF-1 and mitochondrial gene expression and (ii) PPARs and fatty acid oxidation gene expression. In contrast to mammals, there is a divergence in the roles of the coactivators, with PGC-1 alpha linked to fatty acid oxidation through PPAR alpha, and PGC-1 beta with a more prominent role in mediating NRF-1-dependent control of mitochondrial gene expression, as well as distinctions between their respective roles in development and physiological responsiveness.