Biophysical evaluation to categorize pathogenicity of cancer-predisposing mutations identified in the BARD1 BRCT domain

被引:5
作者
Choudhary, Rajan Kumar [1 ,5 ]
Siddiqui, M. Quadir [1 ,6 ]
Gadewal, Nikhil [1 ]
Kumar, Nachimuthu Senthil [3 ]
Kuligina, Ekaterina S. [4 ]
Varma, Ashok K. [1 ,2 ]
机构
[1] Adv Ctr Treatment Res & Educ Canc, Navi Mumbai 410210, Maharashtra, India
[2] Homi Bhabha Natl Inst, Training Sch Complex, Bombay 400094, Maharashtra, India
[3] Mizoram Univ, Dept Biotechnol, Aizawl 796004, Mizoram, India
[4] NN Petrov Inst Oncol, Dept Tumor Growth Biol, Lab Mol Oncol, Pesochny 2, RU-197758 St Petersburg, Russia
[5] Hebrew Univ Jerusalem, Alexander Silberman Inst Life Sci, Dept Biol Chem, Edmond J Safra Campus, IL-91904 Jerusalem, Israel
[6] Univ Nebraska Med Ctr, Omaha, NE USA
基金
俄罗斯科学基金会;
关键词
DNA-DAMAGE RESPONSE; MOLECULAR-DYNAMICS SIMULATIONS; PROTEIN-PROTEIN INTERACTIONS; MESH EWALD METHOD; MISSENSE SUBSTITUTIONS; TUMOR-SUPPRESSOR; CRYSTAL-STRUCTURE; ADP-RIBOSYLATION; LIGASE ACTIVITY; COMPLEX;
D O I
10.1039/c8ra06524a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The BRCT domain of BARD1 (BARD1 BRCT) is involved in many cellular processes such as DNA damage repair (DDR) and cell-cycle checkpoint regulation. BARD1 BRCT performs tumor suppressor function by recruiting BRCA1 at DNA damage site via interactions with other DNA damage repair (DDR) proteins. Considering the importance of the BRCT domain in genomic integrity, we decided to evaluate reported mutations of BARD1 BRCT Cys645Arg, Val695Leu, and Ser761Asn for their pathogenicity. To explore the effect of the mutation on the structure and function, BARD1 BRCT wild-type proteins and the mutant proteins were studied using different biochemical, biophysical and in silico techniques. Comparative fluorescence, circular dichroism (CD) spectroscopy and limited proteolysis studies demonstrate the wellfolded structural conformation of wild-type and mutant proteins. However, thermal and chemical denaturation studies revealed similarity in the folding pattern of BARD1 BRCT wild-type and Cys645Arg mutant proteins, whereas there was a significant loss in the thermodynamic stability of Val695Leu and Ser761Asn mutants. Molecular dynamics (MD) simulation studies on wild-type and mutant protein structures indicate the loss in structural integrity of mutants compared with the wild-type protein.
引用
收藏
页码:34056 / 34068
页数:13
相关论文
共 61 条
[1]   Computational and experimental studies of the interaction between phospho-peptides and the C-terminal domain of BRCA1 [J].
Anisimov, Victor M. ;
Ziemys, Arturas ;
Kizhake, Smitha ;
Yuan, Ziyan ;
Natarajan, Amarnath ;
Cavasotto, Claudio N. .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2011, 25 (11) :1071-1084
[2]   The BRCA1/BARD1 heterodimer, a tumor suppressor complex with ubiquitin E3 ligase activity [J].
Baer, R ;
Ludwig, T .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2002, 12 (01) :86-91
[3]   ProDy: Protein Dynamics Inferred from Theory and Experiments [J].
Bakan, Ahmet ;
Meireles, Lidio M. ;
Bahar, Ivet .
BIOINFORMATICS, 2011, 27 (11) :1575-1577
[4]   GROMACS - A MESSAGE-PASSING PARALLEL MOLECULAR-DYNAMICS IMPLEMENTATION [J].
BERENDSEN, HJC ;
VANDERSPOEL, D ;
VANDRUNEN, R .
COMPUTER PHYSICS COMMUNICATIONS, 1995, 91 (1-3) :43-56
[5]   THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS [J].
BERENDSEN, HJC ;
GRIGERA, JR ;
STRAATSMA, TP .
JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) :6269-6271
[6]   Crystal structure of the BARD1 BRCT domains [J].
Birrane, Gabriel ;
Varma, Ashok K. ;
Soni, Aditi ;
Ladias, John A. A. .
BIOCHEMISTRY, 2007, 46 (26) :7706-7712
[7]   Binding and recognition in the assembly of an active BRCA1 /BARD1 ubiquitin-ligase complex [J].
Brzovic, PS ;
Keeffe, JR ;
Nishikawa, H ;
Miyamoto, K ;
Fox, D ;
Fukuda, M ;
Ohta, T ;
Klevit, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (10) :5646-5651
[8]   BRCA1 RING domain cancer-predisposing mutations - Structural consequences and effects on protein-protein interactions [J].
Brzovic, PS ;
Meza, JE ;
King, MC ;
Klevit, RE .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (44) :41399-41406
[9]   Structure of a BRCA1-BARD1 heterodimeric RING-RING complex [J].
Brzovic, PS ;
Rajagopal, P ;
Hoyt, DW ;
King, MC ;
Klevit, RE .
NATURE STRUCTURAL BIOLOGY, 2001, 8 (10) :833-837
[10]   Functional Annotations Improve the Predictive Score of Human Disease-Related Mutations in Proteins [J].
Calabrese, Remo ;
Capriotti, Emidio ;
Fariselli, Piero ;
Martelli, Pier Luigi ;
Casadio, Rita .
HUMAN MUTATION, 2009, 30 (08) :1237-1244