Diffusion in crowded environments: Trapped by the drift

被引:6
|
作者
Kubala, Piotr [1 ]
Ciesla, Michal [1 ]
Dybiec, Bartlomiej [1 ]
机构
[1] Jagiellonian Univ, Dept Stat Phys, Inst Theoret Phys, Lojasiewicza 11, PL-30348 Krakow, Poland
关键词
FLIGHT SEARCH PATTERNS; ANOMALOUS DIFFUSION; LEVY FLIGHT; RANDOM-WALK; TRANSPORT; MODELS; SCATTERING; DYNAMICS; MEDIA;
D O I
10.1103/PhysRevE.104.044127
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
The diffusion type is determined not only by microscopic dynamics but also by the environment properties. For example, the environment's fractal structure is responsible for the emergence of subdiffusive scaling of the mean square displacement in Markovian systems because the presence of nontrivially placed obstacles puts constraints on possible displacements. We investigate how the additional action of drift changes properties of the diffusion in the crowded environment. It is shown that the action of a constant drift increases chances of trapping, which suppresses the persistent ballistic motion. Such a diffusion becomes anisotropic because the drift introduces a preferred direction of motion which is further altered by interactions with obstacles. Moreover, individual trajectories display a high level of variability, which is responsible for the macroscopic properties of the diffusing front. Overall, the interplay among drift, diffusion, and a crowded environment, as measured by the time-averaged mean square displacement, is responsible for the emergence of superdiffusive and subdiffusive patterns in the very same system. Importantly, in contrast to free motion, the constant drift can enhance signatures of subdiffusive motion as it increases trapping chances.
引用
收藏
页数:13
相关论文
共 50 条
  • [1] Diffusion and reaction in crowded environments
    Echeveria, Carlos
    Tucci, Kay
    Kapral, Raymond
    JOURNAL OF PHYSICS-CONDENSED MATTER, 2007, 19 (06)
  • [2] Models of anomalous diffusion in crowded environments
    Sokolov, Igor M.
    SOFT MATTER, 2012, 8 (35) : 9043 - 9052
  • [3] Diffusion-Limited Reactions in Crowded Environments
    Dorsaz, N.
    De Michele, C.
    Piazza, F.
    De Los Rios, P.
    Foffi, G.
    PHYSICAL REVIEW LETTERS, 2010, 105 (12)
  • [4] Brownian dynamics simulation of protein diffusion in crowded environments
    Mereghetti, Paolo
    Wade, Rebecca C.
    4TH INTERNATIONAL SYMPOSIUM ON SLOW DYNAMICS IN COMPLEX SYSTEMS: KEEP GOING TOHOKU, 2013, 1518 : 511 - 516
  • [5] Diffusion in crowded biological environments: applications of Brownian dynamics
    Dlugosz, Maciej
    Trylska, Joanna
    BMC BIOPHYSICS, 2011, 4
  • [6] Simulating diffusion in crowded environments with multifractional Brownian motion
    Leier, A.
    Marquez-Lago, T. T.
    Burrage, K.
    FEBS JOURNAL, 2012, 279 : 524 - 524
  • [7] Multiple diffusion mechanisms due to nanostructuring in crowded environments
    Sanabria, Hugo
    Kubota, Yoshihisa
    Waxham, M. Neal
    BIOPHYSICAL JOURNAL, 2007, 92 (01) : 313 - 322
  • [8] Optimized Diffusion of Run-and-Tumble Particles in Crowded Environments
    Bertrand, Thibault
    Zhao, Yongfeng
    Benichou, Olivier
    Tailleur, Julien
    Voituriez, Raphael
    PHYSICAL REVIEW LETTERS, 2018, 120 (19)
  • [9] Mechanism of Facilitated Diffusion during a DNA Search in Crowded Environments
    Krepel, Dana
    Gomez, David
    Klumpp, Stefan
    Levy, Yaakov
    JOURNAL OF PHYSICAL CHEMISTRY B, 2016, 120 (43): : 11113 - 11122
  • [10] Diffusion and residence time of hydrogen peroxide and water in crowded protein environments
    Chung, Ying-Hua
    Xia, Junchao
    Margulis, Claudio J.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (46): : 13336 - 13344