DNA looping mediates nucleosome transfer

被引:27
作者
Brennan, Lucy D. [1 ]
Forties, Robert A. [1 ,2 ,4 ]
Patel, Smita S. [3 ]
Wang, Michelle D. [1 ,2 ]
机构
[1] Cornell Univ, Dept Phys, Lab Atom & Solid State Phys, Ithaca, NY 14853 USA
[2] Cornell Univ, Howard Hughes Med Inst, Ithaca, NY 14853 USA
[3] Rutgers Robert Wood Johnson Med Sch, Dept Biochem & Mol Biol, Piscataway, NJ 08854 USA
[4] Advion Inc, 30 Brown Rd, Ithaca, NY 14850 USA
来源
NATURE COMMUNICATIONS | 2016年 / 7卷
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
RNA-POLYMERASE-II; REPLICATION FORK; SINGLE-MOLECULE; H2A/H2B DIMER; HIGH-AFFINITY; T7; HELICASE; TRANSCRIPTION; DYNAMICS; STABILITY; CHAINS;
D O I
10.1038/ncomms13337
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Proper cell function requires preservation of the spatial organization of chromatin modifications. Maintenance of this epigenetic landscape necessitates the transfer of parental nucleosomes to newly replicated DNA, a process that is stringently regulated and intrinsically linked to replication fork dynamics. This creates a formidable setting from which to isolate the central mechanism of transfer. Here we utilized a minimal experimental system to track the fate of a single nucleosome following its displacement, and examined whether DNA mechanics itself, in the absence of any chaperones or assembly factors, may serve as a platform for the transfer process. We found that the nucleosome is passively transferred to available dsDNA as predicted by a simple physical model of DNA loop formation. These results demonstrate a fundamental role for DNA mechanics in mediating nucleosome transfer and preserving epigenetic integrity during replication.
引用
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页数:8
相关论文
共 68 条
[1]   Two distinct modes for propagation of histone PTMs across the cell cycle [J].
Alabert, Constance ;
Barth, Teresa K. ;
Reveron-Gomez, Nazaret ;
Sidoli, Simone ;
Schmidt, Andreas ;
Jensen, Ole N. ;
Imhof, Axel ;
Groth, Anja .
GENES & DEVELOPMENT, 2015, 29 (06) :585-590
[2]   The radial distribution function of worm-like chains [J].
Becker, N. B. ;
Rosa, A. ;
Everaers, R. .
EUROPEAN PHYSICAL JOURNAL E, 2010, 32 (01) :53-69
[3]   INVITRO REPLICATION THROUGH NUCLEOSOMES WITHOUT HISTONE DISPLACEMENT [J].
BONNEANDREA, C ;
WONG, ML ;
ALBERTS, BM .
NATURE, 1990, 343 (6260) :719-726
[4]   Estimating the persistence length of a worm-like chain molecule from force-extension measurements [J].
Bouchiat, C ;
Wang, MD ;
Allemand, JF ;
Strick, T ;
Block, SM ;
Croquette, V .
BIOPHYSICAL JOURNAL, 1999, 76 (01) :409-413
[5]   Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes [J].
Brower-Toland, B ;
Wacker, DA ;
Fulbright, RM ;
Lis, JT ;
Kraus, WL ;
Wang, MD .
JOURNAL OF MOLECULAR BIOLOGY, 2005, 346 (01) :135-146
[6]  
Brower-Toland B, 2004, METHOD ENZYMOL, V376, P62
[7]   Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA [J].
Brower-Toland, BD ;
Smith, CL ;
Yeh, RC ;
Lis, JT ;
Peterson, CL ;
Wang, MD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (04) :1960-1965
[8]   Analysis of the Histone H3.1 Interactome: A Suitable Chaperone for the Right Event [J].
Campos, Eric I. ;
Smits, Arne H. ;
Kang, Young-Hoon ;
Landry, Sebastien ;
Escobar, Thelma M. ;
Nayak, Shruti ;
Ueberheide, Beatrix M. ;
Durocher, Daniel ;
Vermeulen, Michiel ;
Hurwitz, Jerard ;
Reinberg, Danny .
MOLECULAR CELL, 2015, 60 (04) :697-709
[9]   Structure and Scm3-mediated assembly of budding yeast centromeric nucleosomes [J].
Dechassa, Mekonnen Lemma ;
Wyns, Katharina ;
Li, Ming ;
Hall, Michael A. ;
Wang, Michelle D. ;
Luger, Karolin .
NATURE COMMUNICATIONS, 2011, 2
[10]   Detection of forces and displacements along the axial direction in an optical trap [J].
Deufel, C ;
Wang, MD .
BIOPHYSICAL JOURNAL, 2006, 90 (02) :657-667