Smoothing of the thermal stability of DNA duplexes by using modified nucleosides and chaotropic agents

被引:35
|
作者
Nguyen, HK
Fournier, O
Asseline, U
Dupret, D
Thuong, NT
机构
[1] CNRS, Ctr Biophys Mol, F-45071 Orleans 02, France
[2] Appligene Oncor, F-67402 Illkirch Graffenstaden, France
关键词
D O I
10.1093/nar/27.6.1492
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The effect of alkyltrimethylammonium ions on the thermostability of natural and modified DNA duplexes has been investigated. We have shown that the use of tetramethylammonium ions TMA(+) along with the chemical modification of duplexes allow the fine adjustment of T-m and the possibility of obtaining several duplex systems with varied isostabilized temperatures, some of which show greater stability than those of natural DNA. This approach could be very useful for DNA sequencing by hybridization.
引用
收藏
页码:1492 / 1498
页数:7
相关论文
共 50 条
  • [41] NMR solution structure of tricyclo-DNA containing duplexes: insight into enhanced thermal stability and nuclease resistance
    Istrate, Andrei
    Johannsen, Silke
    Istrate, Alena
    Sigel, Roland K. O.
    Leumann, Christian J.
    NUCLEIC ACIDS RESEARCH, 2019, 47 (09) : 4872 - 4882
  • [42] Thermal stability and conformation of antiparallel duplexes formed by P-stereodefined phosphorothioate DNA/LNA chimeric oligomers with DNA and RNA matrices
    Jastrzebska, Katarzyna
    Maciaszek, Anna
    Dolot, Rafal
    Bujacz, Grzegorz
    Guga, Piotr
    ORGANIC & BIOMOLECULAR CHEMISTRY, 2015, 13 (39) : 10032 - 10040
  • [43] Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory
    Chu, Vincent B.
    Bai, Yu
    Lipfert, Jan
    Herschlag, Daniel
    Doniach, Sebastian
    BIOPHYSICAL JOURNAL, 2007, 93 (09) : 3202 - 3209
  • [44] Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory
    Chu, Vincent B.
    BIOPHYSICAL JOURNAL, 2007, : 412A - 412A
  • [45] RELATIONSHIP BETWEEN MISMATCHED BASE PAIRS AND THERMAL-STABILITY OF DNA DUPLEXES .2. EFFECTS OF DEAMINATION OF CYTOSINE
    ULLMAN, JS
    MCCARTHY, BJ
    BIOCHIMICA ET BIOPHYSICA ACTA, 1973, 294 (03) : 416 - 424
  • [46] HELIX-STABILIZING COMPOUNDS CC-1065 AND U-71,184 BIND TO RNA-DNA AND DNA-DNA DUPLEXES CONTAINING MODIFIED INTERNUCLEOTIDE LINKAGES AND STABILIZE DUPLEXES AGAINST THERMAL MELTING
    KIM, DY
    SHIH, DS
    CHO, DY
    SWENSON, DH
    ANTISENSE RESEARCH AND DEVELOPMENT, 1995, 5 (01): : 49 - 57
  • [47] Synthesis of phenazine-tethered arabino and xylofuranosyl oligonucleotide conjugates:: The thermal stability and fluorescence properties of their duplexes (DNA-DNA & DNA-RNA) & triplexes
    Zamaratski, E
    Chattopadhyaya, J
    TETRAHEDRON, 1998, 54 (28) : 8183 - 8206
  • [48] Dipyrido[3,2-a:2′,3′-c]phenazine-tethered oligo-DNA:: Synthesis and thermal stability of their DNA • DNA and DNA • RNA duplexes and DNA • DNA • DNA triplexes
    Ossipov, D
    Zamaratski, E
    Chattopadhyaya, J
    HELVETICA CHIMICA ACTA, 1999, 82 (12) : 2186 - 2200
  • [49] CHEMICAL-REACTIONS IN NUCLEIC-ACID DUPLEXES .8. ASSEMBLY OF HYBRID RNA-DNA-DUPLEXES USING WATER-SOLUBLE CONDENSING AGENTS
    DOLINNAYA, NG
    ASHIRBEKOVA, DT
    SOKOLOVA, NI
    SHABAROVA, ZA
    BIOORGANICHESKAYA KHIMIYA, 1989, 15 (10): : 1346 - 1355
  • [50] Thermal stability and flame retardance of EVA containing DNA-modified clays
    Rajczak, Ewa
    Arrigo, Rossella
    Malucelli, Giulio
    THERMOCHIMICA ACTA, 2020, 686