The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

被引:36
作者
Armisen, David [1 ]
Rajakumar, Rajendhran [2 ,3 ]
Friedrich, Markus [4 ]
Benoit, Joshua B. [5 ]
Robertson, Hugh M. [6 ]
Panfilio, Kristen A. [7 ,8 ]
Ahn, Seung-Joon [9 ,10 ]
Poelchau, Monica F. [11 ]
Chao, Hsu [12 ]
Dinh, Huyen [12 ]
Doddapaneni, Harsha Vardhan [12 ]
Dugan, Shannon [12 ]
Gibbs, Richard A. [12 ]
Hughes, Daniel S. T. [12 ]
Han, Yi [12 ]
Lee, Sandra L. [12 ]
Murali, Shwetha C. [13 ]
Muzny, Donna M. [12 ]
Qu, Jiaxin [12 ]
Worley, Kim C. [12 ]
Munoz-Torres, Monica [14 ]
Abouheif, Ehab [15 ]
Bonneton, Francois [1 ]
Chen, Travis [15 ]
Chiang, Li-Mei [11 ]
Childers, Christopher P. [11 ]
Cridge, Andrew G. [16 ]
Crumiere, Antonin J. J. [1 ]
Decaras, Amelie [1 ]
Didion, Elise M. [5 ]
Duncan, Elizabeth J. [16 ,17 ]
Elpidina, Elena N. [18 ]
Fave, Marie-Julie [15 ]
Finet, Cedric [1 ]
Jacobs, Chris G. C. [19 ,20 ]
Jarvela, Alys M. Cheatle [21 ]
Jennings, Emily C. [5 ]
Jones, Jeffery W. [4 ]
Lesoway, Maryna P. [15 ,22 ,23 ]
Lovegrove, Mackenzie R. [16 ]
Martynov, Alexander [23 ]
Oppert, Brenda [24 ]
Lillico-Ouachour, Angelica [15 ]
Rajakumar, Arjuna [15 ]
Refki, Peter Nagui [1 ,25 ]
Rosendale, Andrew J. [5 ]
Santos, Maria Emilia [1 ]
Toubiana, William [1 ]
van der Zee, Maurijn [19 ]
Jentzsch, Iris M. Vargas [7 ]
机构
[1] Univ Claude Bernard Lyon 1, Inst Genom Fonct Lyon, Univ Lyon, CNRS UMR 5242,Ecole Normale Super Lyon, 46,Allee Italie, F-69364 Lyon 07, France
[2] Univ Florida, Dept Mol Genet & Microbiol, 2033 Mowry Rd, Gainesville, FL 32610 USA
[3] Univ Florida, UF Genet Inst, 2033 Mowry Rd, Gainesville, FL 32610 USA
[4] Wayne State Univ, Dept Biol Sci, Detroit, MI 48202 USA
[5] Univ Cincinnati, Dept Biol Sci, McMicken Coll Arts & Sci, 318 Coll Dr, Cincinnati, OH 45221 USA
[6] Univ Illinois, Dept Entomol, Urbana, IL 61801 USA
[7] Univ Cologne, Inst Zool Dev Biol, Zulpicher Str 47b, D-50674 Cologne, Germany
[8] Univ Warwick, Sch Life Sci, Gibbet Hill Campus, Coventry CV4 7AL, W Midlands, England
[9] USDA ARS, Hort Crops Res Unit, 3420 NW Orchard Ave, Corvallis, OR 97330 USA
[10] Oregon State Univ, Dept Crop & Soil Sci, 3050 SW Campus Way, Corvallis, OR 97331 USA
[11] USDA ARS, Natl Agr Lib, Beltsville, MD 20705 USA
[12] Baylor Coll Med, Human Genome Sequencing Ctr, Dept Human & Mol Genet, One Baylor Plaza, Houston, TX 77030 USA
[13] Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA
[14] Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA
[15] McGill Univ, Dept Biol, 1205 Ave Docteur Penfield Ave, Montreal, PQ H3A 1B1, Canada
[16] Univ Otago, Lab Evolut & Dev, Dept Biochem, POB 56, Dunedin, New Zealand
[17] Univ Leeds, Sch Biol, Fac Biol Sci, Leeds LS2 9JT, W Yorkshire, England
[18] Moscow MV Lomonosov State Univ, AN Belozersky Inst Physicochem Biol, Moscow 119991, Russia
[19] Leiden Univ, Inst Biol, Sylviusweg 72, NL-2333 BE Leiden, Netherlands
[20] Max Planck Inst Chem Ecol, Hans Knoll Str 8, D-07745 Jena, Germany
[21] Univ Maryland, Dept Entomol, College Pk, MD 20742 USA
[22] Smithsonian Trop Res Inst, Apartado Postal 0843-03092, Panama City, Panama
[23] Skolkovo Inst Sci & Technol, Ctr Life Sci, Skolkovo 143025, Russia
[24] USDA ARS, Ctr Grain & Anim Hlth Res, 1515 Coll Ave, Manhattan, KS 66502 USA
[25] Max Planck Inst Evolut Biol, Dept Evolutionary Genet, August Thienemann Str 2, D-24306 Plon, Germany
来源
BMC GENOMICS | 2018年 / 19卷
基金
欧洲研究理事会; 加拿大自然科学与工程研究理事会;
关键词
Water striders; Genome sequence; Water surface locomotion; Evolution; Adaptation; INSULIN-RECEPTOR; HEMIPTERA-HETEROPTERA; MOLECULAR EVOLUTION; MULTIGENE FAMILY; DRAFT GENOME; DROSOPHILA; DUPLICATION; CYTOCHROME-P450; DIVERSITY; PHYLOGENY;
D O I
10.1186/s12864-018-5163-2
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background: Having conquered water surfaces worldwide, the semi-aquatic bugs occupy ponds, streams, lakes, mangroves, and even open oceans. The diversity of this group has inspired a range of scientific studies from ecology and evolution to developmental genetics and hydrodynamics of fluid locomotion. However, the lack of a representative water strider genome hinders our ability to more thoroughly investigate the molecular mechanisms underlying the processes of adaptation and diversification within this group. Results: Here we report the sequencing and manual annotation of the Gerris buenoi (G. buenoi) genome; the first water strider genome to be sequenced thus far. The size of the G. buenoi genome is approximately 1,000Mb, and this sequencing effort has recovered 20,949 predicted protein-coding genes. Manual annotation uncovered a number of local (tandem and proximal) gene duplications and expansions of gene families known for their importance in a variety of processes associated with morphological and physiological adaptations to a water surface lifestyle. These expansions may affect key processes associated with growth, vision, desiccation resistance, detoxification, olfaction and epigenetic regulation. Strikingly, the G. buenoi genome contains three insulin receptors, suggesting key changes in the rewiring and function of the insulin pathway. Other genomic changes affecting with opsin genes may be associated with wavelength sensitivity shifts in opsins, which is likely to be key in facilitating specific adaptations in vision for diverse water habitats. Conclusions: Our findings suggest that local gene duplications might have played an important role during the evolution of water striders. Along with these findings, the sequencing of the G. buenoi genome now provides us the opportunity to pursue exciting research opportunities to further understand the genomic underpinnings of traits associated with the extreme body plan and life history of water striders.
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页数:16
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