Genome-wide identification of auxin response factor (ARF) gene family and the miR160-ARF18-mediated response to salt stress in peanut (Arachis hypogaea L.)

被引:39
作者
Tang, Yanyan [1 ]
Du, Guoning [1 ]
Xiang, Jie [1 ]
Hu, Changli [1 ]
Li, Xiaoting [1 ]
Wang, Weihua [1 ]
Zhu, Hong [1 ]
Qiao, Lixian [1 ]
Zhao, Chunmei [2 ]
Wang, Jingshan [1 ]
Yu, Shanlin [1 ]
Sui, Jiongming [1 ]
机构
[1] Qingdao Agr Univ, Key Lab Qingdao Major Crop Germplasm Resource Inn, Coll Agron, Dry Land Farming Technol Lab Shandong Prov, Qingdao 266109, Peoples R China
[2] Qingdao Agr Univ, Coll Life Sci, Qingdao 266109, Peoples R China
关键词
ARFs; A; duranensis; ipaensis; Expression pattern; miR160; Salt tolerance; FLORAL ORGAN ABSCISSION; ARABIDOPSIS; SEQUENCE; BIOSYNTHESIS; GROWTH; TRANSCRIPTION; EXPRESSION; TOLERANCE; VISUALIZATION; DURANENSIS;
D O I
10.1016/j.ygeno.2021.12.015
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Auxin response factors (ARFs) are transcription factors that regulate the transcription of auxin-responsive genes during plant growth and development. In this study, 29 and 30 ARF members were identified from the two wild peanut species, A. duranensis and A. ipaensis, respectively. The ARFs, including their classifications, conserved domains and evolutionary relationships were characterized. RNA-seq analyses revealed that some of the ARF genes were responsive to abiotic stress, particularly high salinity. In addition to abiotic stress, the expression of 2 ARF members was also regulated by biotic stress, specifically Bradyrhizobium infection in A. duranensis. The ARF gene Arahy.7DXUOK was predicted to be a potential target of miR160. Overexpression of miR160 could cause degradation of the Arahy.7DXUOK target gene transcript and increased salt tolerance in miR160OX transgenic plants. Therefore, these molecular characterization and expression profile analyses provide comprehensive information on ARF family members and will help to elucidate their functions to facilitate further research on peanuts.
引用
收藏
页码:171 / 184
页数:14
相关论文
共 71 条
[1]   Polyploidy and genome evolution in plants [J].
Adams, KL ;
Wendel, JF .
CURRENT OPINION IN PLANT BIOLOGY, 2005, 8 (02) :135-141
[2]   Shifting the limits in wheat research and breeding using a fully annotated reference genome [J].
Appels, Rudi ;
Eversole, Kellye ;
Feuillet, Catherine ;
Keller, Beat ;
Rogers, Jane ;
Stein, Nils ;
Pozniak, Curtis J. ;
Choulet, Frederic ;
Distelfeld, Assaf ;
Poland, Jesse ;
Ronen, Gil ;
Sharpe, Andrew G. ;
Pozniak, Curtis ;
Barad, Omer ;
Baruch, Kobi ;
Keeble-Gagnere, Gabriel ;
Mascher, Martin ;
Ben-Zvi, Gil ;
Josselin, Ambre-Aurore ;
Himmelbach, Axel ;
Balfourier, Francois ;
Gutierrez-Gonzalez, Juan ;
Hayden, Matthew ;
Koh, ChuShin ;
Muehlbauer, Gary ;
Pasam, Raj K. ;
Paux, Etienne ;
Rigault, Philippe ;
Tibbits, Josquin ;
Tiwari, Vijay ;
Spannagl, Manuel ;
Lang, Daniel ;
Gundlach, Heidrun ;
Haberer, Georg ;
Mayer, Klaus F. X. ;
Ormanbekova, Danara ;
Prade, Verena ;
Simkova, Hana ;
Wicker, Thomas ;
Swarbreck, David ;
Rimbert, Helene ;
Felder, Marius ;
Guilhot, Nicolas ;
Kaithakottil, Gemy ;
Keilwagen, Jens ;
Leroy, Philippe ;
Lux, Thomas ;
Twardziok, Sven ;
Venturini, Luca ;
Juhasz, Angela .
SCIENCE, 2018, 361 (6403) :661-+
[3]   The genome sequence of segmental allotetraploid peanut Arachis hypogaea [J].
Bertioli, David J. ;
Jenkins, Jerry ;
Clevenger, Josh ;
Dudchenko, Olga ;
Gao, Dongying ;
Seijo, Guillermo ;
Leal-Bertioli, Soraya C. M. ;
Ren, Longhui ;
Farmer, Andrew D. ;
Pandey, Manish K. ;
Samoluk, Sergio S. ;
Abernathy, Brian ;
Agarwal, Gaurav ;
Ballen-Taborda, Carolina ;
Cameron, Connor ;
Campbell, Jacqueline ;
Chavarro, Carolina ;
Chitikineni, Annapurna ;
Chu, Ye ;
Dash, Sudhansu ;
El Baidouri, Moaine ;
Guo, Baozhu ;
Huang, Wei ;
Do Kim, Kyung ;
Korani, Walid ;
Lanciano, Sophie ;
Lui, Christopher G. ;
Mirouze, Marie ;
Moretzsohn, Marcio C. ;
Pham, Melanie ;
Shin, Jin Hee ;
Shirasawa, Kenta ;
Sinharoy, Senjuti ;
Sreedasyam, Avinash ;
Weeks, Nathan T. ;
Zhang, Xinyou ;
Zheng, Zheng ;
Sun, Ziqi ;
Froenicke, Lutz ;
Aiden, Erez L. ;
Michelmore, Richard ;
Varshney, Rajeev K. ;
Holbrook, C. Corley ;
Cannon, Ethalinda K. S. ;
Scheffler, Brian E. ;
Grimwood, Jane ;
Ozias-Akins, Peggy ;
Cannon, Steven B. ;
Jackson, Scott A. ;
Schmutz, Jeremy .
NATURE GENETICS, 2019, 51 (05) :877-+
[4]   The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut [J].
Bertioli, David John ;
Cannon, Steven B. ;
Froenicke, Lutz ;
Huang, Guodong ;
Farmer, Andrew D. ;
Cannon, Ethalinda K. S. ;
Liu, Xin ;
Gao, Dongying ;
Clevenger, Josh ;
Dash, Sudhansu ;
Ren, Longhui ;
Moretzsohn, Marcio C. ;
Shirasawa, Kenta ;
Huang, Wei ;
Vidigal, Bruna ;
Abernathy, Brian ;
Chu, Ye ;
Niederhuth, Chad E. ;
Umale, Pooja ;
Araujo, Ana Claudia G. ;
Kozik, Alexander ;
Do Kim, Kyung ;
Burow, Mark D. ;
Varshney, Rajeev K. ;
Wang, Xingjun ;
Zhang, Xinyou ;
Barkley, Noelle ;
Guimaraes, Patricia M. ;
Isobe, Sachiko ;
Guo, Baozhu ;
Liao, Boshou ;
Stalker, H. Thomas ;
Schmitz, Robert J. ;
Scheffler, Brian E. ;
Leal-Bertioli, Soraya C. M. ;
Xun, Xu ;
Jackson, Scott A. ;
Michelmore, Richard ;
Ozias-Akins, Peggy .
NATURE GENETICS, 2016, 48 (04) :438-+
[5]   Transcriptome Profiling of Wild Arachis from Water-Limited Environments Uncovers Drought Tolerance Candidate Genes [J].
Brasileiro, Ana C. M. ;
Morgante, Carolina V. ;
Araujo, Ana C. G. ;
Leal-Bertioli, Soraya C. M. ;
Silva, Amanda K. ;
Martins, Andressa C. Q. ;
Vinson, Christina C. ;
Santos, Candice M. R. ;
Bonfim, Orzenil ;
Togawa, Roberto C. ;
Saraiva, Mario A. P. ;
Bertioli, David J. ;
Guimaraes, Patricia M. .
PLANT MOLECULAR BIOLOGY REPORTER, 2015, 33 (06) :1876-1892
[6]   TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data [J].
Chen, Chengjie ;
Chen, Hao ;
Zhang, Yi ;
Thomas, Hannah R. ;
Frank, Margaret H. ;
He, Yehua ;
Xia, Rui .
MOLECULAR PLANT, 2020, 13 (08) :1194-1202
[7]   Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens [J].
Chen, Xiaoping ;
Li, Hongjie ;
Pandey, Manish K. ;
Yang, Qingli ;
Wang, Xiyin ;
Garg, Vanika ;
Li, Haifen ;
Chi, Xiaoyuan ;
Doddamani, Dadakhalandar ;
Hong, Yanbin ;
Upadhyaya, Hari ;
Guo, Hui ;
Khan, Aamir W. ;
Zhu, Fanghe ;
Zhang, Xiaoyan ;
Pan, Lijuan ;
Pierce, Gary J. ;
Zhou, Guiyuan ;
Krishnamohan, Katta A. V. S. ;
Chen, Mingna ;
Zhong, Ni ;
Agarwal, Gaurav ;
Li, Shuanzhu ;
Chitikineni, Annapurna ;
Zhang, Guo-Qiang ;
Sharma, Shivali ;
Chen, Na ;
Liu, Haiyan ;
Janila, Pasupuleti ;
Li, Shaoxiong ;
Wang, Min ;
Wang, Tong ;
Sun, Jie ;
Li, Xingyu ;
Li, Chunyan ;
Wang, Mian ;
Yu, Lina ;
Wen, Shijie ;
Singh, Sube ;
Yang, Zhen ;
Zhao, Jinming ;
Zhang, Chushu ;
Yu, Yue ;
Bi, Jie ;
Zhang, Xiaojun ;
Liu, Zhong-Jian ;
Paterson, Andrew H. ;
Wang, Shuping ;
Liang, Xuanqiang ;
Varshney, Rajeev K. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (24) :6785-6790
[8]   The Auxin Response Factor Transcription Factor Family in Soybean: Genome-Wide Identification and Expression Analyses During Development and Water Stress [J].
Chien Van Ha ;
Dung Tien Le ;
Nishiyama, Rie ;
Watanabe, Yasuko ;
Sulieman, Saad ;
Uyen Thi Tran ;
Mochida, Keiichi ;
Nguyen Van Dong ;
Yamaguchi-Shinozaki, Kazuko ;
Shinozaki, Kazuo ;
Lam-Son Phan Tran .
DNA RESEARCH, 2013, 20 (05) :511-524
[9]   An R2R3-type MYB transcription factor, GmMYB29, regulates isoflavone biosynthesis in soybean [J].
Chu, Shanshan ;
Wang, Jiao ;
Zhu, Ying ;
Liu, Shulin ;
Zhou, Xiaoqiong ;
Zhang, Huairen ;
Wang, Chun-e ;
Yang, Wenming ;
Tian, Zhixi ;
Cheng, Hao ;
Yu, Deyue .
PLOS GENETICS, 2017, 13 (05)
[10]   A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea [J].
Clevenger, Josh ;
Chu, Ye ;
Scheffler, Brian ;
Ozias-Akins, Peggy .
FRONTIERS IN PLANT SCIENCE, 2016, 7