GANPOP: Generative Adversarial Network Prediction of Optical Properties From Single Snapshot Wide-Field Images

被引:28
作者
Chen, Mason T. [1 ]
Mahmood, Faisal [1 ,2 ]
Sweer, Jordan A. [1 ,3 ]
Durr, Nicholas J. [1 ]
机构
[1] Johns Hopkins Univ, Dept Biomed Engn, Baltimore, MD 21218 USA
[2] Harvard Med Sch, Boston, MA 02115 USA
[3] Triple Ring Technol, Newark, CA 94560 USA
关键词
Optical imaging; tissue optical properties; neural networks; machine learning; spatial frequency domain imaging; CONVOLUTIONAL NEURAL-NETWORKS; LIGHT-SCATTERING; REAL-TIME; SPECTROSCOPY; REFLECTANCE; CELLS; MODEL;
D O I
10.1109/TMI.2019.2962786
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
We present a deep learning framework for wide-field, content-aware estimation of absorption and scattering coefficients of tissues, called Generative Adversarial Network Prediction of Optical Properties (GANPOP). Spatial frequency domain imaging is used to obtain ground-truth optical properties at 660 nm from in vivo human hands and feet, freshly resected human esophagectomy samples, and homogeneous tissue phantoms. Images of objects with either flat-field or structured illumination are paired with registered optical property maps and are used to train conditional generative adversarial networks that estimate optical properties from a single input image. We benchmark this approach by comparing GANPOP to a single-snapshot optical property (SSOP) technique, using a normalized mean absolute error (NMAE) metric. In human gastrointestinal specimens, GANPOP with a single structured-light input image estimates the reduced scattering and absorption coefficients with 60% higher accuracy than SSOP while GANPOP with a single flat-field illumination image achieves similar accuracy to SSOP. When applied to both in vivo and ex vivo swine tissues, a GANPOP model trained solely on structured-illumination images of human specimens and phantoms estimates optical properties with approximately 46% improvement over SSOP, indicating adaptability to new, unseen tissue types. Given a training set that appropriately spans the target domain, GANPOP has the potential to enable rapid and accurate wide-field measurements of optical properties.
引用
收藏
页码:1988 / 1999
页数:12
相关论文
共 49 条
[1]   Real-time endoscopic optical properties imaging [J].
Angelo, Joseph P. ;
van de Giessen, Martijn ;
Gioux, Sylvain .
BIOMEDICAL OPTICS EXPRESS, 2017, 8 (11) :5113-5126
[2]  
[Anonymous], 2016, ARXIV161205360
[3]  
[Anonymous], 2018, P INT C LEARN REPR
[4]   Fabrication and characterization of silicone-based tissue phantoms with tunable optical properties in the visible and near infrared domain [J].
Ayers, Frederick ;
Grant, Alex ;
Kuo, Danny ;
Cuccia, David J. ;
Durkin, Anthony J. .
DESIGN AND PERFORMANCE VALIDATION OF PHANTOMS USED IN CONJUNCTION WITH OPTICAL MEASUREMENTS OF TISSUE, 2008, 6870
[5]  
Chen R. T., 2018, arXiv
[6]   Quantitation and mapping of tissue optical properties using modulated imaging [J].
Cuccia, David J. ;
Bevilacqua, Frederic ;
Durkin, Anthony J. ;
Ayers, Frederick R. ;
Tromberg, Bruce J. .
JOURNAL OF BIOMEDICAL OPTICS, 2009, 14 (02)
[7]   Retinal Image Synthesis and Semi-Supervised Learning for Glaucoma Assessment [J].
Diaz-Pinto, Andres ;
Colomer, Adrian ;
Naranjo, Valery ;
Morales, Sandra ;
Xu, Yanwu ;
Frangi, Alejandro F. .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2019, 38 (09) :2211-2218
[8]   Determination of tissue optical properties by steady-state spatial frequency-domain reflectometry [J].
Dognitz, N ;
Wagnieres, G .
LASERS IN MEDICAL SCIENCE, 1998, 13 (01) :55-65
[9]   Light scattering from cervical cells throughout neoplastic progression: influence of nuclear morphology, DNA content, and chromatin texture [J].
Drezek, R ;
Guillaud, M ;
Collier, T ;
Boiko, I ;
Malpica, A ;
Macaulay, C ;
Follen, M ;
Richards-Kortum, R .
JOURNAL OF BIOMEDICAL OPTICS, 2003, 8 (01) :7-16
[10]   First-in-human pilot study of a spatial frequency domain oxygenation imaging system [J].
Gioux, Sylvain ;
Mazhar, Amaan ;
Lee, Bernard T. ;
Lin, Samuel J. ;
Tobias, Adam M. ;
Cuccia, David J. ;
Stockdale, Alan ;
Oketokoun, Rafiou ;
Ashitate, Yoshitomo ;
Kelly, Edward ;
Weinmann, Maxwell ;
Durr, Nicholas J. ;
Moffitt, Lorissa A. ;
Durkin, Anthony J. ;
Tromberg, Bruce J. ;
Frangioni, John V. .
JOURNAL OF BIOMEDICAL OPTICS, 2011, 16 (08)