MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data

被引：507
作者：
Chong, Jasmine
Xia, Jianguo [1 ]
机构：
[1] McGill Univ, Inst Parasitol, Ste Anne De Bellevue, PQ H9X 3V9, Canada
来源：
BIOINFORMATICS | 2018年 / 34卷 / 24期
基金：
加拿大自然科学与工程研究理事会;
关键词：
D O I：
10.1093/bioinformatics/bty528
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
The MetaboAnalyst web application has been widely used for metabolomics data analysis and interpretation. Despite its user-friendliness, the web interface has presented its inherent limitations (especially for advanced users) with regard to flexibility in creating customized workflow, support for reproducible analysis, and capacity in dealing with large data. To address these limitations, we have developed a companion R package (MetaboAnalystR) based on the R code base of the web server. The package has been thoroughly tested to ensure that the same R commands will produce identical results from both interfaces. MetaboAnalystR complements the MetaboAnalyst web server to facilitate transparent, flexible and reproducible analysis of metabolomics data.
引用
收藏
页码：4313 / 4314
页数：2
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