Use of monolithic supports for high-throughput protein and peptide separation in proteomics

被引:21
作者
Andjelkovic, Uros [1 ,2 ]
Tufegdzic, Srdjan [1 ]
Popovic, Milica [3 ]
机构
[1] Univ Belgrade, Inst Chem Technol & Met, Dept Chem, Studentski Trg 12-16, Belgrade 11000, Serbia
[2] Univ Rijeka, Dept Biotechnol, Rijeka, Croatia
[3] Univ Belgrade, Fac Chem, Belgrade, Serbia
关键词
High-throughput; Liquid chromatography; Mass spectrometry; Monoliths; Proteomics; PERFORMANCE LIQUID-CHROMATOGRAPHY; POROUS POLYMER MONOLITHS; IONIZATION MASS-SPECTROMETRY; EFFICIENT SAMPLE PREPARATION; IMMOBILIZED ENZYME REACTORS; SILICA CAPILLARY COLUMNS; HUMAN SERUM-ALBUMIN; AFFINITY-CHROMATOGRAPHY; INTACT PROTEINS; BOTTOM-UP;
D O I
10.1002/elps.201700260
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The exclusive properties of monolithic supports enable fast mass transfer, high porosity, low back pressure, easy preparation process and miniaturisation, and the availability of different chemistries make them particularly suitable materials for high-throughput (HTP) protein and peptide separation. In this review recent advances in monolith-based chromatographic supports for HTP screening of protein and peptide samples are presented and their application in HTP sample preparation (separation, enrichment, depletion, proteolytic digestion) for HTP proteomics is discussed. Development and applications of different monolithic capillary columns in HTP MS-based bottom-up and top-down proteomics are overviewed. By discussing the chromatographic conditions and the mass spectrometric data acquisition conditions an attempt is made to present currently demonstrated capacities of monolithic capillary columns for HTP identification and quantification of proteins and peptides from complex biological samples by MS-based proteomics. Some recent advances in basic monolith technology of importance for proteomics are also discussed.
引用
收藏
页码:2851 / 2869
页数:19
相关论文
共 141 条
[61]   Recent developments in capillary and microchip electroseparations of peptides (2013-middle 2015) [J].
Kasicka, Vaclav .
ELECTROPHORESIS, 2016, 37 (01) :162-188
[62]   Control of Selectivity via Nanochemistry: Monolithic Capillary Column Containing Hydroxyapatite Nanoparticles for Separation of Proteins and Enrichment of Phosphopeptides [J].
Krenkova, Jana ;
Lacher, Nathan A. ;
Svec, Frantisek .
ANALYTICAL CHEMISTRY, 2010, 82 (19) :8335-8341
[63]   Less common applications of monoliths: IV. Recent developments in immobilized enzyme reactors for proteomics and biotechnology [J].
Krenkova, Jana ;
Svec, Frantisek .
JOURNAL OF SEPARATION SCIENCE, 2009, 32 (5-6) :706-718
[64]   Top-down protein identification of proteasome proteins with nanoLC-FT-ICR-MS employing data- independent fragmentation methods [J].
Lakshmanan, Rajeswari ;
Wolff, Jeremy J. ;
Alvarado, Rudy ;
Loo, Joseph A. .
PROTEOMICS, 2014, 14 (10) :1271-1282
[65]   Proteome Digestion Specificity Analysis for Rational Design of Extended Bottom-up and Middle-down Proteomics Experiments [J].
Laskay, Uenige A. ;
Lobas, Anna A. ;
Srzentic, Kristina ;
Gorshkov, Mikhail V. ;
Tsybin, Yury O. .
JOURNAL OF PROTEOME RESEARCH, 2013, 12 (12) :5558-5569
[66]   DIGESTIF: A Universal Quality Standard for the Control of Bottom-Up Proteomics Experiments [J].
Lebert, Dorothee ;
Louwagie, Mathilde ;
Goetze, Sandra ;
Picard, Guillaume ;
Ossola, Reto ;
Duquesne, Caroline ;
Basler, Konrad ;
Ferro, Myriam ;
Rinner, Oliver ;
Aebersold, Ruedi ;
Garin, Jerome ;
Mouz, Nicolas ;
Brunner, Erich ;
Brun, Virginie .
JOURNAL OF PROTEOME RESEARCH, 2015, 14 (02) :787-803
[67]   Recent advances in monolithic column-based boronate-affinity chromatography [J].
Li, Hengye ;
Liu, Zhen .
TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2012, 37 :148-161
[68]   Amperometric L-glutamate biosensor based on bacterial cell-surface displayed glutamate dehydrogenase [J].
Liang, Bo ;
Zhang, Shu ;
Lang, Qiaolin ;
Song, Jianxia ;
Han, Lihui ;
Liu, Aihua .
ANALYTICA CHIMICA ACTA, 2015, 884 :83-89
[69]   CONTINUOUS BEDS FOR STANDARD AND MICRO HIGH-PERFORMANCE LIQUID-CHROMATOGRAPHY [J].
LIAO, JL ;
ZHANG, R ;
HJERTEN, S .
JOURNAL OF CHROMATOGRAPHY, 1991, 586 (01) :21-26
[70]   Automatic and Integrated Micro-Enzyme Assay (AIμEA) Platform for Highly Sensitive Thrombin Analysis via an Engineered Fluorescence Protein-Functionalized Monolithic Capillary Column [J].
Lin, Lihua ;
Liu, Shengquan ;
Nie, Zhou ;
Chen, Yingzhuang ;
Lei, Chunyang ;
Wang, Zhen ;
Yin, Chao ;
Hu, Huiping ;
Huang, Yan ;
Yao, Shouzhuo .
ANALYTICAL CHEMISTRY, 2015, 87 (08) :4552-4559