Cyanobacterial ultrastructure in light of genomic sequence data

被引:30
作者
Gonzalez-Esquer, C. R. [1 ]
Smarda, J. [2 ]
Rippka, R. [3 ]
Axen, S. D. [4 ]
Guglielmi, G. [5 ]
Gugger, M. [3 ]
Kerfeld, C. A. [1 ,6 ,7 ,8 ,9 ]
机构
[1] Michigan State Univ, MSU DOE Plant Res Lab, E Lansing, MI 48824 USA
[2] Masaryk Univ, Dept Biol, Fac Med, Univ Campus,Bldg A6,Kamenice 5, Brno 62500, Czech Republic
[3] Inst Pasteur, Unite Cyanobacteries, CNRS, URA 2172, F-75724 Paris 15, France
[4] Univ Calif San Francisco, Bioinformat Grad Grp, San Francisco, CA 94158 USA
[5] Ecole Normale Super, Inst Biol ENS, IBENS, INSERM,U1024,CNRS,UMR 8197, F-75005 Paris, France
[6] Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA
[7] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
[8] Univ Calif Berkeley, Berkeley Synthet Biol Inst, Berkeley, CA 94720 USA
[9] Michigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA
关键词
Ultrastructure; Morphology; Bioinformatics; Cyanobacteria; Transmission electron microscopy; Protein domain; Carboxysome; Cyanophycin; Polyphosphate; PHB; Glycogen; Lipid droplets; Gas vesicles; ELECTRON-MICROSCOPE; LIPID DROPLETS; DIVERSITY; NITROGEN; ARCHITECTURE; EVOLUTION; GENES;
D O I
10.1007/s11120-016-0286-2
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Cyanobacteria are physiologically and morphologically diverse photosynthetic microbes that play major roles in the carbon and nitrogen cycles of the biosphere. Recently, they have gained attention as potential platforms for the production of biofuels and other renewable chemicals. Many cyanobacteria were characterized morphologically prior to the advent of genome sequencing. Here, we catalog cyanobacterial ultrastructure within the context of genomic sequence information, including high-magnification transmission electron micrographs that represent the diversity in cyanobacterial morphology. We place the image data in the context of tabulated protein domains-which are the structural, functional, and evolutionary units of proteins-from the 126 cyanobacterial genomes comprising the CyanoGEBA dataset. In particular, we identify the correspondence between ultrastructure and the occurrence of genes encoding protein domains related to the formation of cyanobacterial inclusions. This compilation of images and genome-level domain occurrence will prove useful for a variety of analyses of cyanobacterial sequence data and provides a guidebook to morphological features.
引用
收藏
页码:147 / 157
页数:11
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