Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509T)

被引：33

作者：

Sun, Hui ^{[2
]}

Lapidus, Alla ^{[2
]}

Nolan, Matt ^{[2
]}

Lucas, Susan ^{[2
]}

Del Rio, Tijana Glavina ^{[2
]}

Tice, Hope ^{[2
]}

Cheng, Jan-Fang ^{[2
]}

Tapia, Roxane ^{[2
,3
]}

Han, Cliff ^{[2
,3
]}

Goodwin, Lynne ^{[2
,3
]}

Pitluck, Sam ^{[2
]}

Pagani, Ioanna ^{[2
]}

Ivanova, Natalia ^{[2
]}

Mavromatis, Konstantinos ^{[2
]}

Mikhailova, Natalia ^{[2
]}

Pati, Amrita ^{[2
]}

Chen, Amy ^{[4
]}

Palaniappan, Krishna ^{[4
]}

Land, Miriam ^{[2
,5
]}

Hauser, Loren ^{[2
,5
]}

Chang, Yun-Juan ^{[2
,5
]}

Jeffries, Cynthia D. ^{[2
,5
]}

Djao, Olivier Duplex Ngatchou ^{[6
]}

Rohde, Manfred ^{[6
]}

Sikorski, Johannes ^{[1
]}

Goeker, Markus ^{[1
]}

Woyke, Tanja ^{[2
]}

Bristow, James ^{[2
]}

Eisen, Jonathan A. ^{[2
,7
]}

Markowitz, Victor ^{[4
]}

Hugenholtz, Philip ^{[2
]}

Kyrpides, Nikos C. ^{[2
]}

Klenk, Hans-Peter ^{[1
]}

机构：

[1] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany

[2] DOE Joint Genome Inst, Walnut Creek, CA USA

[3] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA

[4] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[5] Oak Ridge Natl Lab, Oak Ridge, TN USA

[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany

[7] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2010年 / 3卷 / 03期

关键词：

Gram-positive; aerobic; pathogen; mesophile; non alkaliphilic; zig-zag-shaped mycelium; actinomycetoma; conjunctivitis; cholangitis; Nocardiopsaceae; GEBA; SP-NOV; STREPTOMYCES-GRISEUS; BACTERIAL NAMES; APPROVED LISTS; SUBSP PRASINA; ACTINOMYCETE; PROPOSAL; CLASSIFICATION; IDENTIFICATION; ARCHAEA;

D O I：

10.4056/sigs.1363462

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Nocardiopsis dassonvillei (Brocq-Rousseau 1904) Meyer 1976 is the type species of the genus Nocardiopsis, which in turn is the type genus of the family Nocardiopsaceae. This species is of interest because of its ecological versatility. Members of N. dassonvillei have been isolated from a large variety of natural habitats such as soil and marine sediments, from different plant and animal materials as well as from human patients. Moreover, representatives of the genus Nocardiopsis participate actively in biopolymer degradation. This is the first complete genome sequence in the family Nocardiopsaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 6,543,312 bp long genome consist of a 5.77 Mbp chromosome and a 0.78 Mbp plasmid and with its 5,570 protein-coding and 77 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：325 / 336

页数：12

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