Dissipative Particle Dynamics Simulation for Vesicle Shape Change

被引:0
作者
Oofuji, Yoshiyuki [1 ]
Urakami, Naohito [1 ]
Imai, Masayuki [2 ]
Yamamoto, Takashi [1 ]
机构
[1] Yamaguchi Univ, Dept Phys & Informat Sci, Yamaguchi 7538512, Japan
[2] Tohoku Univ, Dept Phys, Sendai, Miyagi 9808578, Japan
来源
PROCEEDINGS OF INTERNATIONAL CONFERENCE ON ARTIFICIAL LIFE AND ROBOTICS (ICAROB 2014) | 2014年
关键词
Vesicle Shape Change; Biomembrane; Dissipative Particle Simulation; Area Difference Model; DOMAIN FORMATION; MEMBRANES; TRANSFORMATIONS;
D O I
暂无
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Spherical vesicles can change to various shapes such as oblate, prolate, stomatocyte-like, and starfish-like, according to the osmotic pressure difference between the inner and outer vesicles. The shape changes of vesicles are very important for understanding the activities of living cells. In this study, we investigated the process of vesicle shape change by carrying out dissipative particle dynamics simulations. We prepared spherical vesicles in which the difference between the numbers of lipids forming the inner and outer leaflets (Delta N) varied. If Delta N was small, with a decrease in the number of water beads inside a vesicle (N-w), a transformation from sphere to oblate, then oblate to stomatocyte-like was observed. If Delta N was large, a transformation from sphere to prolate, then prolate to tube-like occurred. The vesicles shape changes were in good agreement with the experiments. To investigate the mechanism of vesicle transformation in detail, we performed simulations by moving lipids between the inner and outer vesicle leaflets to vary Delta N. As a result, a transformation between the prolate and oblate vesicles was observed. These results indicated that the shapes of vesicles were determined by Delta N and N-w.
引用
收藏
页码:308 / 311
页数:4
相关论文
共 18 条
  • [1] A general-purpose coarse-grained molecular dynamics program
    Aoyagi, T
    Sawa, F
    Shoji, T
    Fukunaga, H
    Takimoto, J
    Doi, M
    [J]. COMPUTER PHYSICS COMMUNICATIONS, 2002, 145 (02) : 267 - 279
  • [2] Diffusion of liquid domains in lipid bilayer membranes
    Cicuta, Pietro
    Keller, Sarah L.
    Veatch, Sarah L.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (13) : 3328 - 3331
  • [3] Granfmuller A, 2007, PHYS REV LETT, V98
  • [4] Dynamic simulation of diblock copolymer microphase separation
    Groot, RD
    Madden, TJ
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (20) : 8713 - 8724
  • [5] Dissipative particle dynamics: Bridging the gap between atomistic and mesoscopic simulation
    Groot, RD
    Warren, PB
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (11) : 4423 - 4435
  • [6] TRANSFORMATION PATHWAYS OF LIPOSOMES
    HOTANI, H
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1984, 178 (01) : 113 - 120
  • [7] Dynamics of domain growth in self-assembled fluid vesicles
    Laradji, M
    Sunil Kumar, PB
    [J]. PHYSICAL REVIEW LETTERS, 2004, 93 (19) : 198105 - 1
  • [8] Shape Transformations of Membrane Vesicles from Amphiphilic Triblock Copolymers: A Dissipative Particle Dynamics Simulation Study
    Li, Xuejin
    Pivkin, Igor V.
    Liang, Haojun
    Karniadakis, George Em
    [J]. MACROMOLECULES, 2009, 42 (08) : 3195 - 3200
  • [9] Nano-meter-sized domain formation in lipid membranes observed by small angle neutron scattering
    Masui, T.
    Urakami, N.
    Imai, M.
    [J]. EUROPEAN PHYSICAL JOURNAL E, 2008, 27 (04) : 379 - 389
  • [10] Simulation of Shape Transformations of Lipid Bilayer Vesicles
    Noguchi, Iteru
    Urakami, Naohito
    Imai, Masayuki
    Yamamoto, Takashi
    [J]. KOBUNSHI RONBUNSHU, 2010, 67 (10) : 605 - 610