Smaller reaction volume of triplex taqman real-time reverse transcription-PCR assays for diagnosing coronavirus disease 2019

被引:1
|
作者
Dong, Wenxue [1 ]
Yang, Xu [1 ]
Li, Jing [1 ]
Zhang, Zhiying [1 ]
Liu, Lijun [1 ]
Zhao, Zhipeng [1 ,2 ]
Kang, Longli [1 ]
机构
[1] Xizang Minzu Univ, Sch Med, Key Lab Mol Genet Mech & Intervent Res High Altiu, Xianyang 712000, Shannxi, Peoples R China
[2] Taizhou Univ, Dept Basic Med Sci, Taizhou, Peoples R China
关键词
COVID-19; nucleic acid testing; RT-PCR; SARS-CoV-2;
D O I
10.1002/jcla.24137
中图分类号
R446 [实验室诊断]; R-33 [实验医学、医学实验];
学科分类号
1001 ;
摘要
Background Coronavirus disease 2019 (COVID-19) has had a devastating impact on public health services worldwide. Currently, there are no standard remedies or therapies for COVID-19. it is important to identify and diagnose COVID-19 to control the spread. But clinical symptoms of COVID-19 are very similar to those of other respiratory viruses. Results As a result, the diagnosis of COVID-19 relies heavily on detecting pathogens. We established a bunch of triplex new TaqMan real-time PCR assays. Three sets of primers and probes (targeting the ORF1ab, N, and E genes, respectively) are poorly consistent with other human coronaviruses and the human influenza virus. The sensitivity of established PCR assays notices as few as 100 copies per PCR of the ORF1ab, N, and E genes. Meanwhile, standard curves concluded from constant PCR reaction all showed glorious linear correlations between Ct values and the polymer loading copy variety (correlation coefficient (R-2) of ORF1ab, N, and E genes is 0.996, 0.991, and 0.998, respectively). Surveillance of RNA-based pseudovirus demonstrated that they were identified to be positive with respect to SARS-CoV-2 and that established PCR assays are achievable. Conclusion The assays established provide a smaller reaction volume for diagnosing COVID-19.
引用
收藏
页数:7
相关论文
共 50 条
  • [41] Implementation of an in-house real-time reverse transcription-PCR assay to detect the emerging SARS-CoV-2 N501Y variants
    Bedotto, Marielle
    Fournier, Pierre-Edouard
    Houhamdi, Linda
    Colson, Philippe
    Raoult, Didier
    JOURNAL OF CLINICAL VIROLOGY, 2021, 140
  • [42] Validation and Diagnostic Application of NS and HA Gene-Specific Real-Time Reverse Transcription-PCR Assays for Detection of 2009 Pandemic Influenza A (H1N1) Viruses in Clinical Specimens
    Ronkko, Esa
    Ikonen, Niina
    Kontio, Mia
    Haanpaa, Minna
    Kallio-Kokko, Hannimari
    Mannonen, Laura
    Lappalainen, Maija
    Julkunen, Ilkka
    Ziegler, Thedi
    JOURNAL OF CLINICAL MICROBIOLOGY, 2011, 49 (05) : 2009 - 2011
  • [43] Reliability of real-time reverse-transcription PCR in clinical diagnostics: gold standard or substandard?
    Murphy, Jamie
    Bustin, Stephen A.
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2009, 9 (02) : 187 - 197
  • [44] Evaluation of a duplex reverse-transcription real-time PCR assay for the detection of encephalomyocarditis virus
    Qin, Shaomin
    Underwood, Darren
    Driver, Luke
    Kistler, Carol
    Diallo, Ibrahim
    Kirkland, Peter D.
    JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION, 2018, 30 (04) : 554 - 559
  • [45] Comparative analytical evaluation of the respiratory TaqMan Array Card with real-time PCR and commercial multi-pathogen assays
    Harvey, John J.
    Chester, Stephanie
    Burke, Stephen A.
    Ansbro, Marisela
    Aden, Tricia
    Gose, Remedios
    Sciulli, Rebecca
    Bai, Jing
    DesJardin, Lucy
    Benfer, Jeffrey L.
    Hall, Joshua
    Smole, Sandra
    Doan, Kimberly
    Popowich, Michael D.
    St George, Kirsten
    Quinlan, Tammy
    Halse, Tanya A.
    Li, Zhen
    Perez-Osorio, Ailyn C.
    Glover, William A.
    Russell, Denny
    Reisdorf, Erik
    Whyte, Thomas, Jr.
    Whitaker, Brett
    Hatcher, Cynthia
    Srinivasan, Velusamy
    Tatti, Kathleen
    Tondella, Maria Lucia
    Wang, Xin
    Winchell, Jonas M.
    Mayer, Leonard W.
    Jernigan, Daniel
    Mawle, Alison C.
    JOURNAL OF VIROLOGICAL METHODS, 2016, 228 : 151 - 157
  • [46] Detection of Tumor Cell-Specific mRNA in the Peripheral Blood of Patients with Breast Cancer-Evaluation of Several Markers with Real-Time Reverse Transcription-PCR
    Andergassen, Ulrich
    Hofmann, Simone
    Koelbl, Alexandra C.
    Schindlbeck, Christian
    Neugebauer, Julia
    Hutter, Stefan
    Engelstaedter, Verena
    Ilmer, Matthias
    Friese, Klaus
    Jeschke, Udo
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2013, 14 (01): : 1093 - 1104
  • [47] Predictors of Positive Real-Time Reverse Transcription-Polymerase Chain Reaction Result for Severe Acute Respiratory Syndrome Coronavirus 2
    Ioakeimidis, Nikolaos S.
    Arvanitakis, Konstantinos
    Vakfari, Anastasia
    Kourtparasidou, Sofia
    Lazou, Maria
    Tsolakis, Zisis
    Chalkidou, Maria
    Dervidou, Zoe
    Moraiti, Effrosyni
    Polychronaki, Maria
    Alexandridou, Eleni
    INFECTIOUS DISEASES IN CLINICAL PRACTICE, 2022, 30 (06)
  • [48] Single-Amplicon Multiplex Real-Time Reverse Transcription-PCR with Tiled Probes To Detect SARS-CoV-2 spike Mutations Associated with Variants of Concern
    Babiker, Ahmed
    Immergluck, Katherine
    Stampfer, Samuel D.
    Rao, Anuradha
    Bassit, Leda
    Su, Max
    Nguyen, Vi
    Stittleburg, Victoria
    Ingersoll, Jessica M.
    Bradley, Heath L.
    Mavigner, Maud
    Schoof, Nils
    Kraft, Colleen S.
    Chahroudi, Ann
    Schinazi, Raymond F.
    Martin, Greg S.
    Piantadosi, Anne
    Lam, Wilbur A.
    Waggoner, Jesse J.
    JOURNAL OF CLINICAL MICROBIOLOGY, 2021, 59 (12)
  • [49] Real-time RT-PCR (TaqMan®) assays for the detection of Grapevine Leafroll associated viruses 1-5 and 9
    Osman, Fatima
    Leutenegger, Christian
    Golino, Deborah
    Rowhani, Adib
    JOURNAL OF VIROLOGICAL METHODS, 2007, 141 (01) : 22 - 29
  • [50] Rapid Detection of Porcine Circovirus Type 2 by TaqMan-based Real-time Polymerase Chain Reaction Assays
    Yuan, Wanzhe
    Li, Jiefeng
    Li, Limin
    Sun, Mingtan
    Zheng, Yingshuai
    Qi, Yan
    Sun, Jiguo
    Song, Qinye
    INTERNATIONAL JOURNAL OF APPLIED RESEARCH IN VETERINARY MEDICINE, 2014, 12 (03): : 214 - 220