Uberon, an integrative multi-species anatomy ontology

被引:429
作者
Mungall, Christopher J. [1 ]
Torniai, Carlo [2 ]
Gkoutos, Georgios V. [3 ]
Lewis, Suzanna E. [1 ]
Haendel, Melissa A. [2 ]
机构
[1] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Genom Div, Berkeley, CA 94720 USA
[2] Oregon Hlth & Sci Univ, Lib & Dept Med Informat & Clin Epidemiol, Portland, OR 97239 USA
[3] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England
来源
GENOME BIOLOGY | 2012年 / 13卷 / 01期
基金
美国国家卫生研究院;
关键词
PHENOTYPE ONTOLOGY; INFORMATION; TOOL; INTEROPERABILITY; EVOLUTION; FRAMEWORK; HOMOLOGY; DATABASE; SUPPORT; SYSTEM;
D O I
10.1186/gb-2012-13-1-r5
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes representing a variety of anatomical entities, organized according to traditional anatomical classification criteria. The ontology represents structures in a species-neutral way and includes extensive associations to existing species-centric anatomical ontologies, allowing integration of model organism and human data. Uberon provides a necessary bridge between anatomical structures in different taxa for cross-species inference. It uses novel methods for representing taxonomic variation, and has proved to be essential for translational phenotype analyses. Uberon is available at http://uberon.org
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页数:20
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