Alteration of tumor suppressor BMP5 in sporadic colorectal cancer: a genomic and transcriptomic profiling based study

被引:45
作者
Chen, Erfei [1 ,2 ]
Yang, Fangfang [1 ]
He, Hongjuan [1 ,2 ]
Li, Qiqi [1 ,2 ]
Zhang, Wei [3 ]
Xing, Jinliang [4 ]
Zhu, Ziqing [1 ,2 ]
Jiang, Jingjing [1 ,5 ]
Wang, Hua [1 ,2 ]
Zhao, Xiaojuan [1 ,2 ]
Liu, Ruitao [1 ]
Lei, Lei [1 ,2 ]
Dong, Jing [1 ,2 ]
Pei, Yuchen [1 ,6 ]
Yang, Ying [1 ]
Pan, Junqiang [1 ]
Zhang, Pan [1 ,2 ]
Liu, Shuzhen [1 ,2 ]
Du, Le [1 ,2 ]
Zeng, Yuan [1 ]
Yang, Jin [1 ,2 ]
机构
[1] Northwest Univ, Sch Life Sci, Inst Prevent Genom Med, Xian 710069, Shaanxi, Peoples R China
[2] Northwest Univ, Sch Life Sci, Minist Educ, Key Lab Resource Biol & Biotechnol Western China, Xian 710069, Shaanxi, Peoples R China
[3] Fourth Mil Med Univ, Tangdu Hosp, Helmholtz Sinogerman Lab Canc Res, Dept Pathol, Xian 710038, Shaanxi, Peoples R China
[4] Fourth Mil Med Univ, State Key Lab Canc Biol, Xian, Shaanxi, Peoples R China
[5] Fourth Mil Med Univ, Expt Teaching Ctr Basic Med, Xian, Shaanxi, Peoples R China
[6] Chinese Acad Sci, Shanghai Adv Res Inst, Lab Syst Biol, 100 Haike Rd,Zhangjiang Hitech Pk, Shanghai 201210, Peoples R China
来源
MOLECULAR CANCER | 2018年 / 17卷
关键词
BMP5; Tumor suppressor; Loss of function mutation; Driver gene; Sporadic colorectal cancer;
D O I
10.1186/s12943-018-0925-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
BackgroundAlthough the genetic spectrum of human colorectal cancer (CRC) is mainly characterized by APC, KRAS and TP53 mutations, driver genes in tumor initiation have not been conclusively demonstrated. In this study, we aimed to identify novel markers for CRC.MethodsWe performed exome analysis of sporadic colorectal cancer (sCRC) coding regions to screen loss of function (LoF) mutation genes, and carried out systems-level approaches to confirm top rank gene in this study.ResultsWe identified loss of BMP5 is an early event in CRC. Deep sequencing identified BMP5 was mutated in 7.7% (8/104) of sCRC samples, with 37.5% truncating mutation frequency. Notably, BMP5 negative expression and its prognostic value is uniquely significant in sCRC but not in other tumor types. Furthermore, BMP5 expression was positively correlated with E-cadherin in CRC patients and its dysregulation play a vital role in epithelial-mesenchymal transition (EMT), thus triggering tumor initiation and development. RNA sequencing identified, independent of BMP/Smads pathway, BMP5 signaled though Jak-Stat pathways to inhibit the activation of oncogene EPSTI1.ConclusionsOur result support a novel concept that the importance of BMP5 in sCRC. The tumor suppressor role of BMP5 highlights its crucial role in CRC initiation and development.
引用
收藏
页数:13
相关论文
共 28 条
  • [1] A method and server for predicting damaging missense mutations
    Adzhubei, Ivan A.
    Schmidt, Steffen
    Peshkin, Leonid
    Ramensky, Vasily E.
    Gerasimova, Anna
    Bork, Peer
    Kondrashov, Alexey S.
    Sunyaev, Shamil R.
    [J]. NATURE METHODS, 2010, 7 (04) : 248 - 249
  • [2] Genetics and Genetic Biomarkers in Sporadic Colorectal Cancer
    Carethers, John M.
    Jung, Barbara H.
    [J]. GASTROENTEROLOGY, 2015, 149 (05) : 1177 - +
  • [3] Decreased level of RASSF6 in sporadic colorectal cancer and its anti-tumor effects both in vitro and in vivo
    Chen, Erfei
    Yang, Fangfang
    He, Hongjuan
    Lei, Lei
    Liu, Ruitao
    Du, Le
    Dong, Jing
    Wang, Meng
    Yang, Jin
    [J]. ONCOTARGET, 2016, 7 (15): : 19813 - 19823
  • [4] Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes
    Chen, Rui
    Mias, George I.
    Li-Pook-Than, Jennifer
    Jiang, Lihua
    Lam, Hugo Y. K.
    Chen, Rong
    Miriami, Elana
    Karczewski, Konrad J.
    Hariharan, Manoj
    Dewey, Frederick E.
    Cheng, Yong
    Clark, Michael J.
    Im, Hogune
    Habegger, Lukas
    Balasubramanian, Suganthi
    O'Huallachain, Maeve
    Dudley, Joel T.
    Hillenmeyer, Sara
    Haraksingh, Rajini
    Sharon, Donald
    Euskirchen, Ghia
    Lacroute, Phil
    Bettinger, Keith
    Boyle, Alan P.
    Kasowski, Maya
    Grubert, Fabian
    Seki, Scott
    Garcia, Marco
    Whirl-Carrillo, Michelle
    Gallardo, Mercedes
    Blasco, Maria A.
    Greenberg, Peter L.
    Snyder, Phyllis
    Klein, Teri E.
    Altman, Russ B.
    Butte, Atul J.
    Ashley, Euan A.
    Gerstein, Mark
    Nadeau, Kari C.
    Tang, Hua
    Snyder, Michael
    [J]. CELL, 2012, 148 (06) : 1293 - 1307
  • [5] Epithelial-Stromal Interaction 1 (EPSTI1) Substitutes for Peritumoral Fibroblasts in the Tumor Microenvironment
    de Neergaard, Michala
    Kim, Jiyoung
    Villadsen, Rene
    Fridriksdottir, Agla J.
    Rank, Fritz
    Timmermans-Wielenga, Vera
    Langerod, Anita
    Borresen-Dale, Anne-Lise
    Petersen, Ole W.
    Ronnov-Jessen, Lone
    [J]. AMERICAN JOURNAL OF PATHOLOGY, 2010, 176 (03) : 1229 - 1240
  • [6] Signaling mechanisms of the epithelial-mesenchymal transition
    Gonzalez, David M.
    Medici, Damian
    [J]. SCIENCE SIGNALING, 2014, 7 (344) : re8
  • [7] The screening of the functional microRNA binding site SNPs in sporadic colorectal cancer genes
    He, Hongjuan
    Lei, Lei
    Chen, Erfei
    Xu, Xiaona
    Wang, Lili
    Pan, Junqiang
    Yang, Fangfang
    Wang, Min
    Dong, Jing
    Yang, Jin
    [J]. CANCER BIOLOGY & THERAPY, 2017, 18 (06) : 407 - 413
  • [8] Bone Morphogenetic Proteins 2 and 5 Are Down-regulated in Adrenocortical Carcinoma and Modulate Adrenal Cell Proliferation and Steroidogenesis
    Johnsen, Inga K.
    Kappler, Roland
    Auernhammer, Christoph J.
    Beuschlein, Felix
    [J]. CANCER RESEARCH, 2009, 69 (14) : 5784 - 5792
  • [9] Improving Bioscience Research Reporting: The ARRIVE Guidelines for Reporting Animal Research
    Kilkenny, Carol
    Browne, William J.
    Cuthill, Innes C.
    Emerson, Michael
    Altman, Douglas G.
    [J]. PLOS BIOLOGY, 2010, 8 (06)
  • [10] Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers
    Kumar, Akash
    White, Thomas A.
    MacKenzie, Alexandra P.
    Clegg, Nigel
    Lee, Choli
    Dumpit, Ruth F.
    Coleman, Ilsa
    Ng, Sarah B.
    Salipante, Stephen J.
    Rieder, Mark J.
    Nickerson, Deborah A.
    Corey, Eva
    Lange, Paul H.
    Morrissey, Colm
    Vessella, Robert L.
    Nelson, Peter S.
    Shendure, Jay
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (41) : 17087 - 17092