The complete genome sequence of Bifidobacterium longum LTBL16, a potential probiotic strain from healthy centenarians with strong antioxidant activity

被引:26
作者
Huang, Guohong [1 ,2 ]
Pan, Haibo [1 ]
Zhu, Zhenjun [1 ]
Li, Quanyang [1 ]
机构
[1] Guangxi Univ, Coll Light Ind & Food Engn, 100 Daxue Rd, Nanning 530004, Peoples R China
[2] Guangxi Vocat & Tech Coll, Coll Food & Biol Technol, Ming Yang Ind Pk, Nanning 530226, Peoples R China
基金
中国国家自然科学基金;
关键词
Bifidobacterium; Oxygen resistance; Scavenge free radical; Healthy centenarians; DNA-DAMAGE;
D O I
10.1016/j.ygeno.2019.05.015
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
B. longum LTBL16 is a potential probiotic strain that was isolated from healthy centenarians in Bama, China. In vitro experiments show that B. longum LTBL16 has a strong antioxidant activity and the complete genome of B. longum LTBL16 was sequenced in this work. The genome consists of one 2,430,682 bp circular chromosome that is plasmid free. The circular chromosome has a GC content of 61.23% and contains 2071 coding sequences (CDSs), 4 rRNA manipulators and 55 tRNA coding genes. Genetic analysis showed that at least five protein-coding genes were associated with antioxidant activity, and the abundance of these genes may be related to free radical scavenging rates and oxygen tolerance. In addition, the safety of B. longum LTBL16 was evaluated using a virulence factor database and antibiotic resistance gene database. The results indicate that B. longum LTBL16 has the good potential for the development and utilization as a probiotic.
引用
收藏
页码:769 / 773
页数:5
相关论文
共 25 条
  • [1] Gene Ontology: tool for the unification of biology
    Ashburner, M
    Ball, CA
    Blake, JA
    Botstein, D
    Butler, H
    Cherry, JM
    Davis, AP
    Dolinski, K
    Dwight, SS
    Eppig, JT
    Harris, MA
    Hill, DP
    Issel-Tarver, L
    Kasarskis, A
    Lewis, S
    Matese, JC
    Richardson, JE
    Ringwald, M
    Rubin, GM
    Sherlock, G
    [J]. NATURE GENETICS, 2000, 25 (01) : 25 - 29
  • [2] VFDB: a reference database for bacterial virulence factors
    Chen, LH
    Yang, J
    Yu, J
    Ya, ZJ
    Sun, LL
    Shen, Y
    Jin, Q
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D325 - D328
  • [3] The NAD+-dependent deacetylase, Bifidobacterium longum Sir2 in response to oxidative stress by deacetylating SigH (σH) and FOXO3a in Bifidobacterium longum and HEK293T cell respectively
    Guo, Qing
    Li, Shiyu
    Xie, Yajie
    Zhang, Qian
    Liu, Mengge
    Xu, Zhenrui
    Sun, Hanxiao
    Yang, Yan
    [J]. FREE RADICAL BIOLOGY AND MEDICINE, 2017, 108 : 929 - 939
  • [4] Complete Genome Sequence of Bifidobacterium longum subsp longum BBMN68, a New Strain from a Healthy Chinese Centenarian
    Hao, Yanling
    Huang, Dawei
    Guo, Huiyuan
    Xiao, Man
    An, Haoran
    Zhao, Liang
    Zuo, Fanglei
    Zhang, Bing
    Hu, Songnian
    Song, Shuhui
    Chen, Shangwu
    Ren, Fazheng
    [J]. JOURNAL OF BACTERIOLOGY, 2011, 193 (03) : 787 - 788
  • [5] Higuchi M, 2000, J BIOSCI BIOENG, V90, P484, DOI 10.1016/S1389-1723(01)80028-1
  • [6] Micromolar intracellular hydrogen peroxide disrupts metabolism by damaging iron-sulfur enzymes
    Jang, Soojin
    Imlay, James A.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (02) : 929 - 937
  • [7] The KEGG resource for deciphering the genome
    Kanehisa, M
    Goto, S
    Kawashima, S
    Okuno, Y
    Hattori, M
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D277 - D280
  • [8] From genomics to chemical genomics: new developments in KEGG
    Kanehisa, Minoru
    Goto, Susumu
    Hattori, Masahiro
    Aoki-Kinoshita, Kiyoko F.
    Itoh, Masumi
    Kawashima, Shuichi
    Katayama, Toshiaki
    Araki, Michihiro
    Hirakawa, Mika
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D354 - D357
  • [9] Superoxide accelerates DNA damage by elevating free-iron levels
    Keyer, K
    Imlay, JA
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (24) : 13635 - 13640
  • [10] Screening of antioxidative activity of Bifidobacterium species isolated from Korean infant feces and their identification
    Kim, JY
    Choi, SI
    Heo, TR
    [J]. BIOTECHNOLOGY AND BIOPROCESS ENGINEERING, 2003, 8 (03) : 199 - 204