Sequence and phylogenetic analysis of the mitochondrial genome for the Northern Anchovy, Engraulis mordax (Engraulidae: Clupeiformes)

被引:3
作者
Lewis, Olivia H. [1 ]
Lema, Sean C. [1 ]
机构
[1] Calif Polytech State Univ San Luis Obispo, Dept Biol Sci, Ctr Coastal Marine Sci, San Luis Obispo, CA 93407 USA
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期
关键词
mtDNA; anchovies; mitochondrion; fishery; omega-3; California current;
D O I
10.1080/23802359.2018.1535846
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The northern anchovy, Engraulis mordax, is a small planktivorous fish from the northeastern Pacific Ocean that is an important forage for fishes, birds, and marine mammals, and is also the target of a commercial fishery. Here, we assembled a complete 16,664 bp genome for the E. mordax mitochondrion, which encodes for 12S and 16S rRNAs, 22 tRNAs, 13 protein-coding genes, and a 1016 bp D-loop in the characteristic arrangement of Order Clupeiformes. Phylogenetic analysis confirmed the evolutionary relatedness of E. mordax to other fishes of Family Engraulidae within Order Clupeiformes, but also indicated non-monophyly for the herring family, Clupeidae.
引用
收藏
页码:14 / 16
页数:3
相关论文
共 16 条
[1]  
[Anonymous], 2016, CONTRIBUTING FOOD SE
[2]  
California Department of Fish and Wildlife [CDFW], 2016, CAL COMM NO ANCH LAN
[3]   Patterns and processes in the California Current System [J].
Checkley, David M., Jr. ;
Barth, John A. .
PROGRESS IN OCEANOGRAPHY, 2009, 83 (1-4) :49-64
[4]  
Chiappa-Carrara Xavier, 1993, Ciencias Marinas, V19, P285
[5]   Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae) [J].
Glaser, Frances L. ;
Owen, Kylie S. ;
Henkanaththegedara, Sujan M. ;
Parmenter, Steve ;
Stockwell, Craig A. ;
Lema, Sean C. .
MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02) :797-799
[6]  
Huppert DD, 1980, CALIFORNIAS NO ANCHO
[7]   MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline [J].
Iwasaki, Wataru ;
Fukunaga, Tsukasa ;
Isagozawa, Ryota ;
Yamada, Koichiro ;
Maeda, Yasunobu ;
Satoh, Takashi P. ;
Sado, Tetsuya ;
Mabuchi, Kohji ;
Takeshima, Hirohiko ;
Miya, Masaki ;
Nishida, Mutsumi .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (11) :2531-2540
[8]  
Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]
[9]   Clustal W and clustal X version 2.0 [J].
Larkin, M. A. ;
Blackshields, G. ;
Brown, N. P. ;
Chenna, R. ;
McGettigan, P. A. ;
McWilliam, H. ;
Valentin, F. ;
Wallace, I. M. ;
Wilm, A. ;
Lopez, R. ;
Thompson, J. D. ;
Gibson, T. J. ;
Higgins, D. G. .
BIOINFORMATICS, 2007, 23 (21) :2947-2948
[10]   Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific [J].
Lavoue, Sebastien ;
Bertrand, Joris A. M. ;
Wang, Hui-Yu ;
Chen, Wei-Jen ;
Ho, Hsuan-Ching ;
Motomura, Hiroyuki ;
Hata, Harutaka ;
Sado, Tetsuya ;
Miya, Masaki .
PLOS ONE, 2017, 12 (07)