Evolution of Marsupial Genomes

被引:17
作者
Deakin, Janine E. [1 ]
O'Neill, Rachel J. [2 ,3 ]
机构
[1] Univ Canberra, Inst Appl Ecol, Canberra, ACT 2617, Australia
[2] Univ Connecticut, Dept Mol & Cell Biol, Storrs, CT 06269 USA
[3] Univ Connecticut, Inst Syst Genom, Storrs, CT 06269 USA
来源
ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 8, 2020 | 2020年 / 8卷
基金
美国国家科学基金会; 澳大利亚研究理事会;
关键词
chromosomes; genome evolution; ancestral karyotype; genome sequencing; MAMMALIAN Y-CHROMOSOMES; FACIAL-TUMOR DISEASE; TAMMAR WALLABY; KARYOTYPE EVOLUTION; TASMANIAN DEVIL; CENTROMERE; REARRANGEMENTS; CYTOGENETICS; HISTORY; OPOSSUM;
D O I
10.1146/annurev-animal-021419-083555
中图分类号
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号
0905 ;
摘要
Marsupial genomes, which are packaged into large chromosomes, provide a powerful resource for studying the mechanisms of genome evolution. The extensive and valuable body of work on marsupial cytogenetics, combined more recently with genome sequence data, has enabled prediction of the 2n = 14 karyotype ancestral to allmarsupial families. The application of both chromosome biology and genome sequencing, or chromosomics, has been a necessary approach for various aspects of mammalian genome evolution, such as understanding sex chromosome evolution and the origin and evolution of transmissible tumors in Tasmanian devils. The next phase of marsupial genome evolution research will employ chromosomics approaches to begin addressing fundamental questions in marsupial genome evolution and chromosome evolution more generally. The answers to these complex questions will impact our understanding across a broad range of fields, including the genetics of speciation, genome adaptation to environmental stressors, and species management.
引用
收藏
页码:25 / 45
页数:21
相关论文
共 133 条
[51]   The methylation and telomere landscape in two families of marsupials with different rates of chromosome evolution [J].
Ingles, Emory D. ;
Deakin, Janine E. .
CHROMOSOME RESEARCH, 2018, 26 (04) :317-332
[52]   Global DNA Methylation patterns on marsupial and devil facial tumour chromosomes [J].
Ingles, Emory D. ;
Deakin, Janine E. .
MOLECULAR CYTOGENETICS, 2015, 8
[53]  
International Union for the Conservation of Nature, 2019, IUCN RED LIST THREAT
[54]   Linear assembly of a human centromere on the Y chromosome [J].
Jain, Miten ;
Olsen, Hugh E. ;
Turner, Daniel J. ;
Stoddart, David ;
Bulazel, Kira V. ;
Paten, Benedict ;
Haussler, David ;
Willard, Huntington F. ;
Akeson, Mark ;
Miga, Karen H. .
NATURE BIOTECHNOLOGY, 2018, 36 (04) :321-+
[55]   Adaptation and conservation insights from the koala genome [J].
Johnson, Rebecca N. ;
O'Meally, Denis ;
Chen, Zhiliang ;
Etherington, Graham J. ;
Ho, Simon Y. W. ;
Nash, Will J. ;
Grueber, Catherine E. ;
Cheng, Yuanyuan ;
Whittington, Camilla M. ;
Dennison, Siobhan ;
Peel, Emma ;
Haerty, Wilfried ;
O'Neill, Rachel J. ;
Colgan, Don ;
Russell, Tonia L. ;
Alquezar-Planas, David E. ;
Attenbrow, Val ;
Bragg, Jason G. ;
Brandies, Parice A. ;
Chong, Amanda Yoon-Yee ;
Deakin, Janine E. ;
Di Palma, Federica ;
Duda, Zachary ;
Eldridge, Mark D. B. ;
Ewart, Kyle M. ;
Hogg, Carolyn J. ;
Frankham, Greta J. ;
Georges, Arthur ;
Gillett, Amber K. ;
Govendir, Merran ;
Greenwood, Alex D. ;
Hayakawa, Takashi ;
Helgen, Kristofer M. ;
Hobbs, Matthew ;
Holleley, Clare E. ;
Heider, Thomas N. ;
Jones, Elizabeth A. ;
King, Andrew ;
Madden, Danielle ;
Graves, Jennifer A. Marshall ;
Morris, Katrina M. ;
Neaves, Linda E. ;
Patel, Hardip R. ;
Polkinghorne, Adam ;
Renfree, Marilyn B. ;
Robin, Charles ;
Salinas, Ryan ;
Tsangaras, Kyriakos ;
Waters, Paul D. ;
Waters, Shafagh A. .
NATURE GENETICS, 2018, 50 (08) :1102-+
[56]   The microscopic anatomy of the epiphysis of the opossum [J].
Jordan, HE .
ANATOMICAL RECORD, 1911, 5 (07) :325-338
[57]   Reconstruction and evolutionary history of eutherian chromosomes [J].
Kim, Jaebum ;
Farre, Marta ;
Auvil, Loretta ;
Capitanu, Boris ;
Larkin, Denis M. ;
Ma, Jian ;
Lewin, Harris A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (27) :E5379-E5388
[58]  
King M., 1993, Species evolution: the role of chromosome change
[59]   Transposable elements: genome innovation, chromosome diversity, and centromere conflict [J].
Klein, Savannah J. ;
O'Neill, Rachel J. .
CHROMOSOME RESEARCH, 2018, 26 (1-2) :5-23
[60]   The Genome 10K Project: A Way Forward [J].
Koepfli, Klaus-Peter ;
Paten, Benedict ;
O'Brien, Stephen J. .
ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 3, 2015, 3 :57-111