A computational study of the interactions of the caespitate molecule with water

被引:23
作者
Mammino, Liliana [1 ]
Kabanda, Mwadham M. [1 ]
机构
[1] Univ Venda, Dept Chem, ZA-0950 Thohoyandou, South Africa
关键词
caespitate; caespitate-water adducts; intramolecular and intermolecular hydrogen bonding; PCM; phloroglucinols;
D O I
10.1002/qua.21594
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The water solvent effects on the caespitate molecule-an acylated and prenylated phloroglucinol of natural origin exhibiting antibacterial and antifungal activities-are investigated both as bulk effects and considering explicit water molecules H-bonded to its donor and acceptor centers. All calculations are performed at HF/6-31G(d,p) level and the bulk effect of the solvent is calculated with the PCM method. PCM calculations without explicit water molecules show a change in the relative energy pattern, for which the five lowest energy conformers have only the intramolecular hydrogen bond involving the carbonyl O atom of the acyl chain and one of the neighboring OH groups of the phloroglucinol moiety (first H-bond), whereas in vacuo, the 24 lowest energy conformers (accounting for practically all the population) have also the intramolecular hydrogen bond (second H-bond) involving an O atom of the ester function (with which the prenyl chain ends) and one of the neighboring OH groups of the phloroglucinol moiety. Calculations with explicit water molecules show that the first intramolecular H-bond is mostly maintained, whereas the second H-bond is not maintained on competition with intermolecular H-bonds with water molecules. Preferred geometrical arrangements of water molecules around the caespitate molecule are identified and the effects, on such geometrical preferences, of the presence of the two substituent chains are highlighted by comparison with the adducts of the parent compound. (c) 2008 Wiley Periodicals, Inc.
引用
收藏
页码:1772 / 1791
页数:20
相关论文
共 53 条
[1]  
Ahn DS, 2003, B KOREAN CHEM SOC, V24, P695
[2]   Conformational landscape of (R,R)-pterocarpans with biological activity in vacuo and in aqueous solution (PCM and/or water clusters) [J].
Alagona, G ;
Ghio, C .
JOURNAL OF PHYSICAL CHEMISTRY A, 2006, 110 (02) :647-659
[3]   Interplay of intra- and intermolecular H-bonds for the addition of a water molecule to the neutral and N-protonated forms of noradrenaline [J].
Alagona, G ;
Ghio, C .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2002, 90 (02) :641-656
[4]   Basis set, level, and continuum solvation effects on the stability of a synthetic dipeptide: PIDOTIMOD [J].
Alagona, G ;
Ghio, C ;
Villani, V .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (29) :5823-5832
[5]  
ALAGONA G, 1988, MOL PHYSICS CHEM BIO, V2, P507
[6]   Recent advances in the description of solvent effects with the polarizable continuum model [J].
Amovilli, C ;
Barone, V ;
Cammi, R ;
Cancès, E ;
Cossi, M ;
Mennucci, B ;
Pomelli, CS ;
Tomasi, J .
ADVANCES IN QUANTUM CHEMISTRY, VOL 32: QUANTUM SYSTEMS IN CHEMISTRY AND PHYSICS, PT II, 1998, 32 :227-261
[7]   Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent model [J].
Barone, V ;
Cossi, M .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (11) :1995-2001
[8]  
Barone V, 1998, J COMPUT CHEM, V19, P404, DOI 10.1002/(SICI)1096-987X(199803)19:4<404::AID-JCC3>3.0.CO
[9]  
2-W
[10]   A new definition of cavities for the computation of solvation free energies by the polarizable continuum model [J].
Barone, V ;
Cossi, M ;
Tomasi, J .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (08) :3210-3221