COVID-19 detection and heatmap generation in chest x-ray images

被引:22
作者
Kusakunniran, Worapan [1 ]
Karnjanapreechakorn, Sarattha [1 ]
Siriapisith, Thanongchai [2 ]
Borwarnginn, Punyanuch [1 ]
Sutassananon, Krittanat [1 ]
Tongdee, Trongtum [2 ]
Saiviroonporn, Pairash [2 ]
机构
[1] Mahidol Univ, Fac Informat & Commun Technol, Phutthamonthon Dist, Nakhon Pathom, Thailand
[2] Mahidol Univ, Siriraj Hosp, Dept Radiol, Bangkok, Thailand
关键词
COVID-19; chest x-ray; heatmap; lung detection; ResNet; NETWORK;
D O I
10.1117/1.JMI.8.S1.014001
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Purpose: The outbreak of COVID-19 or coronavirus was first reported in 2019. It has widely and rapidly spread around the world. The detection of COVID-19 cases is one of the important factors to stop the epidemic, because the infected individuals must be quarantined. One reliable way to detect COVID-19 cases is using chest x-ray images, where signals of the infection are located in lung areas. We propose a solution to automatically classify COVID-19 cases in chest x-ray images. Approach: The ResNet-101 architecture is adopted as the main network with more than 44 millions parameters. The whole net is trained using the large size of 1500 x 1500 x-ray images. The heatmap under the region of interest of segmented lung is constructed to visualize and emphasize signals of COVID-19 in each input x-ray image. Lungs are segmented using the pretrained U-Net. The confidence score of being COVID-19 is also calculated for each classification result. Results: The proposed solution is evaluated based on COVID-19 and normal cases. It is also tested on unseen classes to validate a regularization of the constructed model. They include other normal cases where chest x-ray images are normal without any disease but with some small remarks, and other abnormal cases where chest x-ray images are abnormal with some other diseases containing remarks similar to COVID-19. The proposed method can achieve the sensitivity, specificity, and accuracy of 97%, 98%, and 98%, respectively. Conclusions: It can be concluded that the proposed solution can detect COVID-19 in a chest x-ray image. The heatmap and confidence score of the detection are also demonstrated, such that users or human experts can use them for a final diagnosis in practical usages. (C) The Authors. Published by SPIE under a Creative Commons Attribution 4.0 Unported License.
引用
收藏
页数:14
相关论文
共 28 条
[1]   Classification of COVID-19 in chest X-ray images using DeTraC deep convolutional neural network [J].
Abbas, Asmaa ;
Abdelsamea, Mohammed M. ;
Gaber, Mohamed Medhat .
APPLIED INTELLIGENCE, 2021, 51 (02) :854-864
[2]   COVID-CAPS: A capsule network-based framework for identification of COVID-19 cases from X-ray images [J].
Afshar, Parnian ;
Heidarian, Shahin ;
Naderkhani, Farnoosh ;
Oikonomou, Anastasia ;
Plataniotis, Konstantinos N. ;
Mohammadi, Arash .
PATTERN RECOGNITION LETTERS, 2020, 138 :638-643
[3]  
[Anonymous], 2015, Keras: Deep Learning for Humans
[4]   Covid-19: automatic detection from X-ray images utilizing transfer learning with convolutional neural networks [J].
Apostolopoulos, Ioannis D. ;
Mpesiana, Tzani A. .
PHYSICAL AND ENGINEERING SCIENCES IN MEDICINE, 2020, 43 (02) :635-640
[5]  
Bukhari S.U., 2020, MEDRXIV2020032620044
[6]  
Burlacu A., 2020, Health Informatics Preprint, DOI [10.1101/2020.04.28.20082776, DOI 10.1101/2020.04.28.20082776]
[7]  
Chollet F., 2016, The Keras Blog
[8]   Performance of some image processing algorithms in TensorFlow [J].
Demirovic, Damir ;
Skejic, Emir ;
Serifovic-Trbalic, Amira .
2018 25TH INTERNATIONAL CONFERENCE ON SYSTEMS, SIGNALS AND IMAGE PROCESSING (IWSSIP), 2018,
[9]  
Deng J, 2009, PROC CVPR IEEE, P248, DOI 10.1109/CVPRW.2009.5206848
[10]  
Hall L.O., 2020, ARXIV PREPRINT ARXIV