Model based grouping of species across environmental gradients

被引:72
作者
Dunstan, Piers K.
Foster, Scott D.
Darnell, Ross
机构
[1] CSIRO Mathematics, Informatics and Statistics
关键词
Species archetype; Finite mixture model; Grouping; Biodiversity; Prediction; LOGISTIC-REGRESSION; MAXIMUM-LIKELIHOOD; VARIABLE SELECTION; BIODIVERSITY; DISSIMILARITY; DISTRIBUTIONS; DIVERSITY; PATTERNS; MIXTURE; PREDICT;
D O I
10.1016/j.ecolmodel.2010.11.030
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
We present a novel approach to the statistical analysis and prediction of multispecies data. The approach allows the simultaneous grouping and quantification of multiple species' responses to environmental gradients. The underlying statistical model is a finite mixture model, where mixing is performed over the individual species' responses to environmental gradients. Species; with similar responses are grouped with minimal information loss. We term these groups species archetypes. Each species archetype has an associated GLM that can be used to predict distributions with appropriate measures of uncertainty. Initially, we illustrate the concept and method using artificial data and then with application to real data comprising 200 species from the Great Barrier Reef (GBR) lagoon on 13 oceanographic and geological gradients from 12 degrees S to 24 degrees S. The 200 species from the GBR are well represented by 15 species archetypes. The model is interpreted through maps of the probability of presence for a fine scale set of locations throughout the study area. Maps of uncertainty are also produced to pro vide statistical context. The presence of each species archetype was strongly influenced by oceanographic gradients, principally temperature, oxygen and salinity. The number of species in each group ranged from 4 to 34. The method has potential application to the analysis of multispecies distribution patterns and for multispecies management. Crown Copyright (C) 2010 Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:955 / 963
页数:9
相关论文
共 43 条
  • [1] A hybrid EM/Gauss-Newton algorithm for maximum likelihood in mixture distributions
    Aitkin, M
    Aitkin, I
    [J]. STATISTICS AND COMPUTING, 1996, 6 (02) : 127 - 130
  • [2] Anderson T.W., 1986, STAT ANAL DATA, V2nd, DOI DOI 10.1007/978-94-009-4109-0
  • [3] [Anonymous], 2008, EM ALGORITHM EXTENSI
  • [4] [Anonymous], 2007, AIMS/CSIRO/QM/QDPI CRC Reef Research Task Final Report).
  • [5] A NEW APPROACH TO THE SPECIES CLASSIFICATION PROBLEM IN FLORISTIC ANALYSIS
    AUSTIN, MP
    BELBIN, L
    [J]. AUSTRALIAN JOURNAL OF ECOLOGY, 1982, 7 (01): : 75 - 89
  • [6] Locomotion in labrid fishes: implications for habitat use and cross-shelf biogeography on the Great Barrier Reef
    Bellwood, DR
    Wainwright, PC
    [J]. CORAL REEFS, 2001, 20 (02) : 139 - 150
  • [7] IDENTIFYING CONSERVATION PRIORITIES IN MEXICO THROUGH GEOGRAPHIC INFORMATION-SYSTEMS AND MODELING
    BOJORQUEZTAPIA, LA
    AZUARA, I
    EZCURRA, E
    FLORESVILLELA, O
    [J]. ECOLOGICAL APPLICATIONS, 1995, 5 (01) : 215 - 231
  • [8] Chase JM., 2003, Ecological niches: linking classical and contemporary approaches
  • [9] Resolving the biodiversity paradox
    Clark, James S.
    Dietze, Mike
    Chakraborty, Sukhendu
    Agarwal, Pankaj K.
    Ibanez, Ines
    LaDeau, Shannon
    Wolosin, Mike
    [J]. ECOLOGY LETTERS, 2007, 10 (08) : 647 - 659
  • [10] Individuals and the Variation Needed for High Species Diversity in Forest Trees
    Clark, James S.
    [J]. SCIENCE, 2010, 327 (5969) : 1129 - 1132