ANALYSIS OF GENETIC DIVERSITY OF Ficus carica L. (Moraceae ) COLLECTION USING SIMPLE SEQUENCE REPEAT (SSR) MARKERS

被引:12
作者
Marcotuli, Ilaria [1 ]
Mazzeo, Andrea [2 ]
Nigro, Domenica [2 ]
Giove, Stefania Lucia [1 ]
Giancaspro, Angelica [1 ]
Colasuonno, Pasqualina [1 ]
Prgomet, Zeljko [3 ]
Prgomet, Iva [4 ]
Tarantino, Annalisa [5 ]
Ferrara, Giuseppe [2 ]
Gadaleta, Agata [1 ]
机构
[1] Univ Bari Aldo Moro, Dept Environm & Territorial Sci, Via G Amendola 165-A, I-70126 Bari, Italy
[2] Univ Bari Aldo Moro, Dept Soil Plant & Food Sci, Via G Amendola 165-A, I-70126 Bari, Italy
[3] Coll Fluminense Polytech Rijeka, Trpimirova 2-V, Rijeka 51000, Croatia
[4] Skink, Rovinj 52210, Croatia
[5] Univ Foggia, Dept Sci Agr Food & Environm, Via Napoli 25, I-71122 Foggia, Italy
来源
ACTA SCIENTIARUM POLONORUM-HORTORUM CULTUS | 2019年 / 18卷 / 04期
关键词
fig; breba; SSRs; genetic diversity; population structure; ISOZYME VARIATION; FIG; SOFTWARE; ORIGIN; RAPD;
D O I
10.24326/asphc.2019.4.9
中图分类号
S6 [园艺];
学科分类号
0902 ;
摘要
Modern technologies and accurate information on genetic diversity and structure are contributing to improve the plant breeding, in particular for all the minor species with a lack of data. Genetic diversity of 139 different Ficus carica L. genotypes collected from Italy and Croatia, and divided into two subgroups: uniferous (only main crop) and biferous (brcba and main crop), was investigated using 49 microsatellite markers. A total of 70 alleles were generated, of which 64 (91.4%) showed a polymorphic pattern indicating high level of genetic diversity within the studied collection. The mean heterozygosity over the 64 single locus microsatellites was 0.33 and the expected and observed averaged variance were 16.50 and 184.08, respectively. The 139 fig genotypes formed two clusters in the PCoA analysis, suggesting a division between Italian and Croatian genotypes. Moreover, the fig accessions could be divided into two main clusters based on the STRUCTURE analysis according to the biological type, uniferous or biferous, with partly overlapping varieties. In conclusion, our results demonstrated that molecular markers were able to discriminate among genotypes and useful for the authentication of fig tree varieties (homonymies and synonymies).
引用
收藏
页码:93 / 109
页数:17
相关论文
共 25 条
[1]   Microsatellite Markers as Reliable Tools for Fig Cultivar Identification [J].
Achtak, Hafid ;
Oukabli, Ahmed ;
Ater, Mohammed ;
Santoni, Sylvain ;
Kjellberg, Finn ;
Khadari, Bouchaib .
JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE, 2009, 134 (06) :624-631
[2]   Comparative analysis of genetic diversity in two Tunisian collections of fig cultivars based on random amplified polymorphic DNA and inter simple sequence repeats fingerprints [J].
Amel, SH ;
Khaled, C ;
Messaoud, M ;
Mohamed, M ;
Mokhtar, T .
GENETIC RESOURCES AND CROP EVOLUTION, 2005, 52 (05) :563-573
[3]   Genetic structure and differentiation in cultivated fig (Ficus carica L.) [J].
Aradhya, Mallikarjuna K. ;
Stover, Ed ;
Velasco, Dianne ;
Koehmstedt, Anne .
GENETICA, 2010, 138 (06) :681-694
[4]   ISOZYME VARIATION IN LYCHEE (LITCHI-CHINENSIS SONN) [J].
ARADHYA, MK ;
ZEE, FT ;
MANSHARDT, RM .
SCIENTIA HORTICULTURAE, 1995, 63 (1-2) :21-35
[5]   Comparative Assessment of SSR and AFLP Markers for Evaluation of Genetic Diversity and Conservation of Fig, Ficus carica L., Genetic Resources in Tunisia [J].
Baraket, Ghada ;
Chatti, Khaled ;
Saddoud, Olfa ;
Ben Abdelkarim, Ahmed ;
Mars, Messaoud ;
Trifi, Mokhtar ;
Hannachi, Amel Salhi .
PLANT MOLECULAR BIOLOGY REPORTER, 2011, 29 (01) :171-184
[6]   Genetic analysis of Tunisian fig (Ficus carica L.) cultivars using amplified fragment length polymorphism (AFLP) markers [J].
Baraket, Ghada ;
Chatti, Khaled ;
Saddoud, Olfa ;
Mars, Messaoud ;
Marrakchi, Mohamed ;
Trifi, Mokhtar ;
Salhi-Hannachi, Amel .
SCIENTIA HORTICULTURAE, 2009, 120 (04) :487-492
[7]   Molecular characterization of autochthonous Turkish fig accessions [J].
Caliskan, O. ;
Polat, A. A. ;
Celikkol, P. ;
Bakir, M. .
SPANISH JOURNAL OF AGRICULTURAL RESEARCH, 2012, 10 (01) :130-140
[8]   Analysis of genetic diversity and relationships in a Tunisian fig (Ficus carica) germplasm collection by random amplified microsatellite polymorphisms [J].
Chatti, Khaled ;
Saddoud, Olfa ;
Salhi-Hannachi, Amel ;
Mars, Messaoud ;
Marrakchi, Mohamed ;
Trifi, Mokhtar .
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2007, 49 (03) :386-391
[9]  
CONDIT IRA J., 1955, HILGARDIA, V23, P323
[10]   On the origin of the fig:: Phylogenetic relationships of moraceae from ndhF sequences [J].
Datwyler, SL ;
Weiblen, GD .
AMERICAN JOURNAL OF BOTANY, 2004, 91 (05) :767-777