A kinetic study of Trichoderma reesei Cel7B catalyzed cellulose hydrolysis

被引:7
作者
Song, Xiangfei [1 ]
Zhang, Shujun [1 ]
Wang, Yefei [1 ]
Li, Jingwen [1 ]
He, Chunyan [1 ]
Yao, Lishan [1 ]
机构
[1] Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Lab Biofuels, Shandong Prov Key Lab Synthet Biol, Qingdao 266061, Peoples R China
基金
中国国家自然科学基金;
关键词
Trichoderma reesei; Cel7B; Kinetics; Adsorption; Cellulose; GROMOS FORCE-FIELD; CRYSTAL-STRUCTURE; ENZYMATIC-HYDROLYSIS; INSOLUBLE CELLULOSE; X-RAY; PROTEIN; SYSTEM; ACID; CBM;
D O I
10.1016/j.enzmictec.2016.02.008
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
One prominent feature of Trichoderma reesei (Tr) endoglucanases catalyzed cellulose hydrolysis is that the reaction slows down quickly after it starts (within minutes). But the mechanism of the slowdown is not well understood. A structural model of Tr-Cel7B catalytic domain bound to cellulose was built computationally and the potentially important binding residues were identified and tested experimentally. The 13 tested mutants show different binding properties in the adsorption to phosphoric acid swollen cellulose and filter paper. Though the partitioning parameter to filter paper is about 10 times smaller than that to phosphoric acid swollen cellulose, a positive correlation is shown for two substrates. The kinetic studies show that the reactions slow down quickly for both substrates. This slowdown is not correlated to the binding constant but anticorrelated to the enzyme initial activity. The amount of reducing sugars released after 24 h by Cel7B in phosphoric acid swollen cellulose, Avicel and filter paper cellulose hydrolysis is correlated with the enzyme activity against a soluble substrate p-nitrophenyl lactoside. Six of the 13 tested mutants, including N47A, N52D, S99A, N323D, S324A, and S346A, yield similar to 15-35% more reducing sugars than the wild type (WT) Cel7B in phosphoric acid swollen cellulose and filter paper hydrolysis. This study reveals that the slowdown of the reaction is not due to the binding of the enzyme to cellulose. The activity of Tr-Cel7B against the insoluble substrate cellulose is determined by the enzyme's capability in hydrolyzing the soluble substrate. (C) 2016 Elsevier Inc. All rights reserved.
引用
收藏
页码:9 / 16
页数:8
相关论文
共 38 条
[1]   Improving Enzymes for Biomass Conversion: A Basic Research Perspective [J].
Banerjee, Goutami ;
Scott-Craig, John S. ;
Walton, Jonathan D. .
BIOENERGY RESEARCH, 2010, 3 (01) :82-92
[2]   Enzymatic Degradation of (Ligno) cellulose [J].
Bornscheuer, Uwe ;
Buchholz, Klaus ;
Seibel, Juergen .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2014, 53 (41) :10876-10893
[3]   Optimization of the determination of organic acids and sugars in fruit juices by ion-exclusion liquid chromatography [J].
Chinnici, F ;
Spinabelli, U ;
Riponi, C ;
Amati, A .
JOURNAL OF FOOD COMPOSITION AND ANALYSIS, 2005, 18 (2-3) :121-130
[4]   STUDIES OF THE CELLULOLYTIC SYSTEM OF THE FILAMENTOUS FUNGUS TRICHODERMA-REESEI QM-9414 - SUBSTRATE-SPECIFICITY AND TRANSFER ACTIVITY OF ENDOGLUCANASE-I [J].
CLAEYSSENS, M ;
VANTILBEURGH, H ;
KAMERLING, JP ;
BERG, J ;
VRSANSKA, M ;
BIELY, P .
BIOCHEMICAL JOURNAL, 1990, 270 (01) :251-256
[5]   Transient Kinetics and Rate-Limiting Steps for the Processive Cellobiohydrolase Cel7A: Effects of Substrate Structure and Carbohydrate Binding Domain [J].
Cruys-Bagger, Nicolaj ;
Tatsumi, Hirosuke ;
Ren, Guilin Robin ;
Borch, Kim ;
Westh, Peter .
BIOCHEMISTRY, 2013, 52 (49) :8938-8948
[6]   Pre-steady-state Kinetics for Hydrolysis of Insoluble Cellulose by Cellobiohydrolase Cel7A [J].
Cruys-Bagger, Nicolaj ;
Elmerdahl, Jens ;
Praestgaard, Eigil ;
Tatsumi, Hirosuke ;
Spodsberg, Nikolaj ;
Borch, Kim ;
Westh, Peter .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (22) :18451-18458
[7]   Protein docking using case-based reasoning [J].
Ghoorah, Anisah W. ;
Devignes, Marie-Dominique ;
Smail-Tabbone, Malika ;
Ritchie, David W. .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2013, 81 (12) :2150-2158
[8]   GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation [J].
Hess, Berk ;
Kutzner, Carsten ;
van der Spoel, David ;
Lindahl, Erik .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2008, 4 (03) :435-447
[9]   Quantitative determination of cellulose accessibility to cellulase based on adsorption of a nonhydrolytic fusion protein containing CBM and GFP with its applications [J].
Hong, Jiong ;
Ye, Xinhao ;
Zhang, Y. -H. Percival .
LANGMUIR, 2007, 23 (25) :12535-12540
[10]   Mechanism of Initial Rapid Rate Retardation in Cellobiohydrolase Catalyzed Cellulose Hydrolysis [J].
Jalak, Juergen ;
Vaeljamaee, Priit .
BIOTECHNOLOGY AND BIOENGINEERING, 2010, 106 (06) :871-883