Patient similarity network of newly diagnosed multiple myeloma identifies patient subgroups with distinct genetic features and clinical implications

被引:66
作者
Bhalla, Sherry [1 ]
Melnekoff, David T. [2 ]
Aleman, Adolfo [1 ,3 ]
Leshchenko, Violetta [1 ,3 ]
Restrepo, Paula [1 ,3 ]
Keats, Jonathan [4 ]
Onel, Kenan [2 ,3 ,5 ,6 ]
Sawyer, Jeffrey R. [7 ]
Madduri, Deepu [1 ,3 ]
Richter, Joshua [1 ,3 ]
Richard, Shambavi [1 ,3 ]
Chari, Ajai [1 ,3 ]
Cho, Hearn Jay [1 ,3 ]
Dudley, Joel T. [8 ]
Jagannath, Sundar [1 ,3 ]
Lagana, Alessandro [1 ,2 ,9 ]
Parekh, Samir [1 ,3 ,9 ]
机构
[1] Icahn Sch Med Mt Sinai, Tisch Canc Inst, New York, NY 10029 USA
[2] Icahn Sch Med Mt Sinai, Dept Genet & Genom Sci, New York, NY 10029 USA
[3] Icahn Sch Med Mt Sinai, Dept Hematol & Med Oncol, New York, NY 10029 USA
[4] Translat Genom Res Inst, Phoenix, AZ USA
[5] Icahn Sch Med Mt Sinai, Dept Pediat Hematol & Oncol, New York, NY 10029 USA
[6] Icahn Sch Med Mt Sinai, Dept Pathol Mol & Cell Based Med, New York, NY 10029 USA
[7] Univ Arkansas Med Sci, Myeloma Ctr, Little Rock, AR 72205 USA
[8] Tempus Labs Inc, Chicago, IL USA
[9] Icahn Sch Med Mt Sinai, Dept Oncol Sci, New York, NY 10029 USA
关键词
INTERNATIONAL STAGING SYSTEM; JUMPING TRANSLOCATIONS; MOLECULAR CLASSIFICATION; HIGH-RISK; HETEROGENEITY; PATHOGENESIS; MECHANISM; RECEPTOR; THERAPY; DRIVERS;
D O I
10.1126/sciadv.abg9551
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The remarkable genetic heterogeneity of multiple myeloma poses a substantial challenge for proper prognostication and clinical management of patients. Here, we introduce MM-PSN, the first multiomics patient similarity network of myeloma. MM-PSN enabled accurate dissection of the genetic and molecular landscape of the disease and determined 12 distinct subgroups defined by five data types generated from genomic and transcriptomic profiling of 655 patients. MM-PSN identified patient subgroups not previously described defined by specific patterns of alterations, enriched for specific gene vulnerabilities, and associated with potential therapeutic options. Our analysis revealed that co-occurrence of t(4;14) and 1q gain identified patients at significantly higher risk of relapse and shorter survival as compared to t(4;14) as a single lesion. Furthermore, our results show that 1q gain is the most important single lesion conferring high risk of relapse and that it can improve on the current International Staging Systems (ISS and R-ISS).
引用
收藏
页数:18
相关论文
共 79 条
[1]   Clinical characteristics and treatment outcomes of newly diagnosed multiple myeloma with chromosome 1q abnormalities [J].
Abdallah, Nadine ;
Greipp, Patricia ;
Kapoor, Prashant ;
Gertz, Morie A. ;
Dispenzieri, Angela ;
Baughn, Linda B. ;
Lacy, Martha Q. ;
Hayman, Suzanne R. ;
Buadi, Francis K. ;
Dingli, David ;
Go, Ronald S. ;
Hwa, Yi L. ;
Fonder, Amie ;
Hobbs, Miriam ;
Lin, Yi ;
Leung, Nelson ;
Kourelis, Taxiarchis ;
Warsame, Rahma ;
Siddiqui, Mustaqeem ;
Lust, John ;
Kyle, Robert A. ;
Bergsagel, Leif ;
Ketterling, Rhett ;
Rajkumar, S. Vincent ;
Kumar, Shaji K. .
BLOOD ADVANCES, 2020, 4 (15) :3509-3519
[2]   Preclinical evaluation of the simultaneous inhibition of MCL-1 and BCL-2 with the combination of S63845 and venetoclax in multiple myeloma [J].
Algarin, Esperanza M. ;
Diaz-Tejedor, Andrea ;
Mogollon, Pedro ;
Hernandez-Garcia, Susana ;
Corchete, Luis A. ;
San-Segundo, Laura ;
Martin-Sanchez, Montserrat ;
Gonzalez-Mendez, Lorena ;
Schoumacher, Marie ;
Banquet, Seprimebastien ;
Kraus-Berthier, Laurence ;
Kloos, Ioana ;
Derreal, Alix ;
Halilovic, Ensar ;
Maacke, Heiko ;
Gutierrez, Norma C. ;
Mateos, Maria-Victoria ;
Paino, Teresa ;
Garayoa, Mercedes ;
Ocio, Enrique M. .
HAEMATOLOGICA, 2020, 105 (03)
[3]   A mechanistic rationale for MEK inhibitor therapy in myeloma based on blockade of MAF oncogene expression [J].
Annunziata, Christina M. ;
Hernandez, Lidia ;
Davis, R. Eric ;
Zingone, Adriana ;
Lamy, Laurence ;
Lam, Lloyd T. ;
Hurt, Elaine M. ;
Shaffer, Arthur L. ;
Kuehl, W. Michael ;
Staudt, Louis M. .
BLOOD, 2011, 117 (08) :2396-2404
[4]   The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity [J].
Barretina, Jordi ;
Caponigro, Giordano ;
Stransky, Nicolas ;
Venkatesan, Kavitha ;
Margolin, Adam A. ;
Kim, Sungjoon ;
Wilson, Christopher J. ;
Lehar, Joseph ;
Kryukov, Gregory V. ;
Sonkin, Dmitriy ;
Reddy, Anupama ;
Liu, Manway ;
Murray, Lauren ;
Berger, Michael F. ;
Monahan, John E. ;
Morais, Paula ;
Meltzer, Jodi ;
Korejwa, Adam ;
Jane-Valbuena, Judit ;
Mapa, Felipa A. ;
Thibault, Joseph ;
Bric-Furlong, Eva ;
Raman, Pichai ;
Shipway, Aaron ;
Engels, Ingo H. ;
Cheng, Jill ;
Yu, Guoying K. ;
Yu, Jianjun ;
Aspesi, Peter, Jr. ;
de Silva, Melanie ;
Jagtap, Kalpana ;
Jones, Michael D. ;
Wang, Li ;
Hatton, Charles ;
Palescandolo, Emanuele ;
Gupta, Supriya ;
Mahan, Scott ;
Sougnez, Carrie ;
Onofrio, Robert C. ;
Liefeld, Ted ;
MacConaill, Laura ;
Winckler, Wendy ;
Reich, Michael ;
Li, Nanxin ;
Mesirov, Jill P. ;
Gabriel, Stacey B. ;
Getz, Gad ;
Ardlie, Kristin ;
Chan, Vivien ;
Myer, Vic E. .
NATURE, 2012, 483 (7391) :603-607
[5]  
Bataille R, 2005, HAEMATOLOGICA, V90, P706
[6]   Relapsed refractory multiple myeloma: a comprehensive overview [J].
Bazarbachi, Abdul Hamid ;
Al Hamed, Rama ;
Malard, Florent ;
Harousseau, Jean-Luc ;
Mohty, Mohamad .
LEUKEMIA, 2019, 33 (10) :2343-2357
[7]   Molecular pathogenesis and a consequent classification of multiple myeloma [J].
Bergsagel, PL ;
Kuehl, WM .
JOURNAL OF CLINICAL ONCOLOGY, 2005, 23 (26) :6333-6338
[8]   Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups [J].
Bolli, Niccolo ;
Biancon, Giulia ;
Moarii, Matahi ;
Gimondi, Silvia ;
Li, Yilong ;
de Philippis, Chiara ;
Maura, Francesco ;
Sathiaseelan, Vijitha ;
Tai, Yu-Tzu ;
Mudie, Laura ;
O'Meara, Sarah ;
Raine, Keiran ;
Teague, Jon W. ;
Butler, Adam P. ;
Carniti, Cristiana ;
Gerstung, Moritz ;
Bagratuni, Tina ;
Kastritis, Efstathios ;
Dimopoulos, Meletios ;
Corradini, Paolo ;
Anderson, Kenneth C. ;
Moreau, Philippe ;
Minvielle, Stephane ;
Campbell, Peter J. ;
Papaemmanuil, Elli ;
Avet-Loiseau, Herve ;
Munshi, Nikhil C. .
LEUKEMIA, 2018, 32 (12) :2604-2616
[9]   Heterogeneity of genomic evolution and mutational profiles in multiple myeloma [J].
Bolli, Niccolo ;
Avet-Loiseau, Herve ;
Wedge, David C. ;
Van Loo, Peter ;
Alexandrov, Ludmil B. ;
Martincorena, Inigo ;
Dawson, Kevin J. ;
Iorio, Francesco ;
Nik-Zainal, Serena ;
Bignell, Graham R. ;
Hinton, Jonathan W. ;
Li, Yilong ;
Tubio, Jose M. C. ;
McLaren, Stuart ;
Meara, Sarah O' ;
Butler, Adam P. ;
Teague, Jon W. ;
Mudie, Laura ;
Anderson, Elizabeth ;
Rashid, Naim ;
Tai, Yu-Tzu ;
Shammas, Masood A. ;
Sperling, Adam S. ;
Fulciniti, Mariateresa ;
Richardson, Paul G. ;
Parmigiani, Giovanni ;
Magrangeas, Florence ;
Minvielle, Stephane ;
Moreau, Philippe ;
Attal, Michel ;
Facon, Thierry ;
Futreal, P. Andrew ;
Anderson, Kenneth C. ;
Campbell, Peter J. ;
Munshi, Nikhil C. .
NATURE COMMUNICATIONS, 2014, 5
[10]   Gene expression profiling for molecular classification of multiple myeloma in newly diagnosed patients [J].
Broyl, Annemiek ;
Hose, Dirk ;
Lokhorst, Henk ;
de Knegt, Yvonne ;
Peeters, Justine ;
Jauch, Anna ;
Bertsch, Uta ;
Buijs, Arjan ;
Stevens-Kroef, Marian ;
Beverloo, H. Berna ;
Vellenga, Edo ;
Zweegman, Sonja ;
Kersten, Marie-Josee ;
van der Holt, Bronno ;
el Jarari, Laila ;
Mulligan, George ;
Goldschmidt, Hartmut ;
van Duin, Mark ;
Sonneveld, Pieter .
BLOOD, 2010, 116 (14) :2543-2553