BRCA1 promoter hypermethylation on circulating tumor DNA correlates with improved survival of patients with ovarian cancer

被引:14
作者
Elazezy, Maha [1 ]
Prieske, Katharina [2 ,3 ]
Kluwe, Lan [4 ]
Oliveira-Ferrer, Leticia [2 ]
Peine, Sven [5 ]
Mueller, Volkmar [2 ]
Woelber, Linn [2 ]
Schmalfeldt, Barbara [2 ]
Pantel, Klaus [1 ]
Joosse, Simon A. [1 ,3 ]
机构
[1] Univ Med Ctr Hamburg Eppendorf, Dept Tumor Biol, Martinistr 52, D-20246 Hamburg, Germany
[2] Univ Med Ctr Hamburg Eppendorf, Dept Gynecol & Gynecol Oncol, Hamburg, Germany
[3] Univ Med Ctr Hamburg Eppendorf, Mildred Scheel Canc Career Ctr HaTriCS4, Hamburg, Germany
[4] Univ Med Ctr Hamburg Eppendorf, Dept Oral & Maxillofacial Surg, Hamburg, Germany
[5] Univ Med Ctr Hamburg Eppendorf, Dept Transfus Med, Hamburg, Germany
关键词
BRCA1; ctDNA; liquid biopsy; MS-qPCR; SPORADIC BREAST; LIQUID BIOPSY; METHYLATION; QUANTIFICATION; FREQUENCY; MUTATIONS; REGION; PLASMA;
D O I
10.1002/1878-0261.13108
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Methylation of the BRCA1 promoter is an epigenetic gene expression regulator and is frequently observed in ovarian cancer; however, conversion of methylation status is thought to drive disease recurrence. Therefore, longitudinal monitoring of methylation status by liquid biopsy in cell-free DNA may be a predictive marker. In total, 135 plasma samples were collected from 69 ovarian cancer patients before and during systemic treatment. Our liquid biopsy assay could detect down to a single molecule of methylated DNA in a high background of normal DNA (0.03%) with perfect specificity in control samples. We found that 60% of the cancer patients exhibited BRCA1 promoter hypermethylation at one point, although 24% lost hypermethylation during treatment. Multivariate survival analyses indicate that relapses are independent events and that hypermethylation and methylation conversion are independently correlated to longer relapse-free survival. We present a highly sensitive and specific methylation-specific quantitative PCR-based liquid biopsy assay. BRCA1 promoter hypermethylation is frequently found in ovarian cancer and is often reversed upon recurrence, indicating the selection of therapy-resistant clones and unfavorable clinical outcome.
引用
收藏
页码:3615 / 3625
页数:11
相关论文
共 34 条
[1]   Patterns of genomic loss of heterozygosity predict homologous recombination repair defects in epithelial ovarian cancer [J].
Abkevich, V. ;
Timms, K. M. ;
Hennessy, B. T. ;
Potter, J. ;
Carey, M. S. ;
Meyer, L. A. ;
Smith-McCune, K. ;
Broaddus, R. ;
Lu, K. H. ;
Chen, J. ;
Tran, T. V. ;
Williams, D. ;
Iliev, D. ;
Jammulapati, S. ;
FitzGerald, L. M. ;
Krivak, T. ;
DeLoia, J. A. ;
Gutin, A. ;
Mills, G. B. ;
Lanchbury, J. S. .
BRITISH JOURNAL OF CANCER, 2012, 107 (10) :1776-1782
[2]   Modelling recurrent events: a tutorial for analysis in epidemiology [J].
Amorim, Leila D. A. F. ;
Cai, Jianwen .
INTERNATIONAL JOURNAL OF EPIDEMIOLOGY, 2015, 44 (01) :324-333
[3]  
Baldwin RL, 2000, CANCER RES, V60, P5329
[4]   Integrated genomic analyses of ovarian carcinoma [J].
Bell, D. ;
Berchuck, A. ;
Birrer, M. ;
Chien, J. ;
Cramer, D. W. ;
Dao, F. ;
Dhir, R. ;
DiSaia, P. ;
Gabra, H. ;
Glenn, P. ;
Godwin, A. K. ;
Gross, J. ;
Hartmann, L. ;
Huang, M. ;
Huntsman, D. G. ;
Iacocca, M. ;
Imielinski, M. ;
Kalloger, S. ;
Karlan, B. Y. ;
Levine, D. A. ;
Mills, G. B. ;
Morrison, C. ;
Mutch, D. ;
Olvera, N. ;
Orsulic, S. ;
Park, K. ;
Petrelli, N. ;
Rabeno, B. ;
Rader, J. S. ;
Sikic, B. I. ;
Smith-McCune, K. ;
Sood, A. K. ;
Bowtell, D. ;
Penny, R. ;
Testa, J. R. ;
Chang, K. ;
Dinh, H. H. ;
Drummond, J. A. ;
Fowler, G. ;
Gunaratne, P. ;
Hawes, A. C. ;
Kovar, C. L. ;
Lewis, L. R. ;
Morgan, M. B. ;
Newsham, I. F. ;
Santibanez, J. ;
Reid, J. G. ;
Trevino, L. R. ;
Wu, Y. -Q. ;
Wang, M. .
NATURE, 2011, 474 (7353) :609-615
[5]  
Capizzi E, 2008, DIAGN MOL PATHOL, V17, P34, DOI 10.1097/PDM.0b013e3181359e1f
[6]   Methylation of the BRCA1 promoter region in sporadic breast and ovarian cancer:: correlation with disease characteristics [J].
Catteau, A ;
Harris, WH ;
Xu, CF ;
Solomon, E .
ONCOGENE, 1999, 18 (11) :1957-1965
[7]   Survival analysis part IV: Further concepts and methods in survival analysis [J].
Clark, TG ;
Bradburn, MJ ;
Love, SB ;
Altman, DG .
BRITISH JOURNAL OF CANCER, 2003, 89 (05) :781-786
[8]  
Dobrovic A, 1997, CANCER RES, V57, P3347
[9]   Circulating cell-free DNA (cfDNA) levels in BRCA1 and BRCA2 mutation carriers: A preliminary study [J].
Douvdevani, Amos ;
Bernstein-Molho, Rinat ;
Asraf, Keren ;
Doolman, Ram ;
Laitman, Yael ;
Friedman, Eitan .
CANCER BIOMARKERS, 2020, 28 (03) :269-273
[10]   Techniques of using circulating tumor DNA as a liquid biopsy component in cancer management [J].
Elazezy, Maha ;
Joosse, Simon A. .
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2018, 16 :370-378