Modulation of Toll-like receptor 1 intracellular domain structure and activity by Zn2+ ions

被引:17
作者
Lushpa, Vladislav A. [1 ,2 ]
Goncharuk, Marina, V [1 ]
Lin, Cong [3 ]
Zalevsky, Arthur O. [1 ]
Talyzina, Irina A. [1 ,4 ]
Luginina, Aleksandra P. [2 ]
Vakhrameev, Daniil D. [2 ]
Shevtsov, Mikhail B. [2 ]
Goncharuk, Sergey A. [1 ,2 ]
Arseniev, Alexander S. [1 ]
Borshchevskiy, Valentin, I [2 ,5 ,6 ]
Wang, Xiaohui [3 ,7 ]
Mineev, Konstantin S. [1 ,2 ]
机构
[1] RAS, Shemyakin Ovchinnikov Inst Bioorgan Chem, Moscow, Russia
[2] Moscow Inst Phys & Technol, Dolgoprudnyi, Russia
[3] Chinese Acad Sci, Changchun Inst Appl Chem, Lab Chem Biol, Changchun, Jilin, Peoples R China
[4] Skolkovo Inst Sci & Technol, Ctr Life Sci, Moscow, Russia
[5] Forschungszentrum Julich, Inst Biol Informat Proc IBI 7 Struct Biochem, Julich, Germany
[6] Forschungszentrum Julich, JuStruct Julich Ctr Struct Biol, Julich, Germany
[7] Univ Sci & Technol China, Dept Appl Chem & Engn, Hefei, Peoples R China
基金
俄罗斯基础研究基金会; 中国国家自然科学基金;
关键词
ADAPTER MAL/TIRAP REVEALS; CRYSTAL-STRUCTURE; SIGNAL-TRANSDUCTION; TIR DOMAIN; ZINC; RECOGNITION; BINDING; RELAXATION; N-15; COUPLINGS;
D O I
10.1038/s42003-021-02532-0
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Toll-like receptors (TLRs) play an important role in the innate immune response. While a lot is known about the structures of their extracellular parts, many questions are still left unanswered, when the structural basis of TLR activation is analyzed for the TLR intracellular domains. Here we report the structure and dynamics of TLR1 toll-interleukin like (TIR) cytoplasmic domain in crystal and in solution. We found that the TLR1-TIR domain is capable of specific binding of Zn with nanomolar affinity. Interactions with Zn are mediated by cysteine residues 667 and 686 and C667 is essential for the Zn binding. Potential structures of the TLR1-TIR/Zn complex were predicted in silico. Using the functional assays for the heterodimeric TLR1/2 receptor, we found that both Zn addition and Zn depletion affect the activity of TLR1, and C667A mutation disrupts the receptor activity. Analysis of C667 position in the TLR1 structure and possible effects of C667A mutation, suggests that zinc-binding ability of TLR1-TIR domain is critical for the receptor activation. Lushpa et al report the structure and dynamics of the TLR1 toll-interleukin like (TIR) cytoplasmic domain in both crystal and solution. They demonstrate that the TLR1 TIR domain is capable of specific binding of Zn with nanomolar affinity, which appears to be critical for receptor activation, and provide potential structures TLR1-TIR/Zn complex based on in silico data.
引用
收藏
页数:12
相关论文
共 80 条
[1]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[2]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[3]  
Akira S, 2006, CURR TOP MICROBIOL, V311, P1
[4]   ProDy: Protein Dynamics Inferred from Theory and Experiments [J].
Bakan, Ahmet ;
Meireles, Lidio M. ;
Bahar, Ivet .
BIOINFORMATICS, 2011, 27 (11) :1575-1577
[5]   Understanding early TLR signaling through the Myddosome [J].
Balka, Katherine R. ;
De Nardo, Dominic .
JOURNAL OF LEUKOCYTE BIOLOGY, 2019, 105 (02) :339-351
[6]   The molecular structure of the Toll-like receptor 3 ligand-binding domain [J].
Bell, JK ;
Botos, I ;
Hall, PR ;
Askins, J ;
Shiloach, J ;
Segal, DM ;
Davies, DR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (31) :10976-10980
[7]   The Structural Biology of Toll-like Receptors [J].
Botos, Istvan ;
Segal, David M. ;
Davies, David R. .
STRUCTURE, 2011, 19 (04) :447-459
[8]   Optimization of data collection taking radiation damage into account [J].
Bourenkov, Gleb P. ;
Popov, Alexander N. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :409-419
[9]   Differential Regulation of TLR-Dependent MyD88 and TRIF Signaling Pathways by Free Zinc Ions [J].
Brieger, Anne ;
Rink, Lothar ;
Haase, Hajo .
JOURNAL OF IMMUNOLOGY, 2013, 191 (04) :1808-1817
[10]   Binding specificity of Toll-like receptor cytoplasmic domains [J].
Brown, V ;
Brown, RA ;
Ozinsky, A ;
Hesselberth, JR ;
Fields, S .
EUROPEAN JOURNAL OF IMMUNOLOGY, 2006, 36 (03) :742-753