A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

被引:6032
作者
Salmena, Leonardo [1 ,2 ]
Poliseno, Laura [1 ,2 ]
Tay, Yvonne [1 ,2 ]
Kats, Lev [1 ,2 ]
Pandolfi, Pier Paolo [1 ,2 ]
机构
[1] Harvard Univ, Sch Med, Beth Israel Deaconess Med Ctr,Dept Med, Canc Genet Program,Beth Israel Deaconess Canc Ctr, Boston, MA 02215 USA
[2] Harvard Univ, Sch Med, Beth Israel Deaconess Med Ctr,Dept Pathol, Canc Genet Program,Beth Israel Deaconess Canc Ctr, Boston, MA 02215 USA
基金
澳大利亚国家健康与医学研究理事会; 加拿大健康研究院;
关键词
NONCODING RNAS; UNTRANSLATED REGION; MICRORNA SPONGES; DOWN-REGULATION; MESSENGER-RNAS; GENE; EXPRESSION; GENOME; PSEUDOGENES; REVEALS;
D O I
10.1016/j.cell.2011.07.014
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Here, we present a unifying hypothesis about how messenger RNAs, transcribed pseudogenes, and long noncoding RNAs "talk" to each other using microRNA response elements (MREs) as letters of a new language. We propose that this "competing endogenous RNA" (ceRNA) activity forms a large-scale regulatory network across the transcriptome, greatly expanding the functional genetic information in the human genome and playing important roles in pathological conditions, such as cancer.
引用
收藏
页码:353 / 358
页数:6
相关论文
共 50 条
[1]   Target mRNA abundance dilutes microRNA and siRNA activity [J].
Arvey, Aaron ;
Larsson, Erik ;
Sander, Chris ;
Leslie, Christina S. ;
Marks, Debora S. .
MOLECULAR SYSTEMS BIOLOGY, 2010, 6
[2]   Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes [J].
Balasubramanian, Suganthi ;
Zheng, Deyou ;
Liu, Yuen-Jong ;
Fang, Gang ;
Frankish, Adam ;
Carriero, Nicholas ;
Robilotto, Rebecca ;
Cayting, Philip ;
Gerstein, Mark .
GENOME BIOLOGY, 2009, 10 (01)
[3]   Our genome unveiled [J].
Baltimore, D .
NATURE, 2001, 409 (6822) :814-816
[4]   MicroRNAs: Target Recognition and Regulatory Functions [J].
Bartel, David P. .
CELL, 2009, 136 (02) :215-233
[5]   Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs [J].
Bartel, DP ;
Chen, CZ .
NATURE REVIEWS GENETICS, 2004, 5 (05) :396-400
[6]   Integrative analysis of the melanoma transcriptome [J].
Berger, Michael F. ;
Levin, Joshua Z. ;
Vijayendran, Krishna ;
Sivachenko, Andrey ;
Adiconis, Xian ;
Maguire, Jared ;
Johnson, Laura A. ;
Robinson, James ;
Verhaak, Roel G. ;
Sougnez, Carrie ;
Onofrio, Robert C. ;
Ziaugra, Liuda ;
Cibulskis, Kristian ;
Laine, Elisabeth ;
Barretina, Jordi ;
Winckler, Wendy ;
Fisher, David E. ;
Getz, Gad ;
Meyerson, Matthew ;
Jaffe, David B. ;
Gabriel, Stacey B. ;
Lander, Eric S. ;
Dummer, Reinhard ;
Gnirke, Andreas ;
Nusbaum, Chad ;
Garraway, Levi A. .
GENOME RESEARCH, 2010, 20 (04) :413-427
[7]   The landscape of somatic copy-number alteration across human cancers [J].
Beroukhim, Rameen ;
Mermel, Craig H. ;
Porter, Dale ;
Wei, Guo ;
Raychaudhuri, Soumya ;
Donovan, Jerry ;
Barretina, Jordi ;
Boehm, Jesse S. ;
Dobson, Jennifer ;
Urashima, Mitsuyoshi ;
Mc Henry, Kevin T. ;
Pinchback, Reid M. ;
Ligon, Azra H. ;
Cho, Yoon-Jae ;
Haery, Leila ;
Greulich, Heidi ;
Reich, Michael ;
Winckler, Wendy ;
Lawrence, Michael S. ;
Weir, Barbara A. ;
Tanaka, Kumiko E. ;
Chiang, Derek Y. ;
Bass, Adam J. ;
Loo, Alice ;
Hoffman, Carter ;
Prensner, John ;
Liefeld, Ted ;
Gao, Qing ;
Yecies, Derek ;
Signoretti, Sabina ;
Maher, Elizabeth ;
Kaye, Frederic J. ;
Sasaki, Hidefumi ;
Tepper, Joel E. ;
Fletcher, Jonathan A. ;
Tabernero, Josep ;
Baselga, Jose ;
Tsao, Ming-Sound ;
Demichelis, Francesca ;
Rubin, Mark A. ;
Janne, Pasi A. ;
Daly, Mark J. ;
Nucera, Carmelo ;
Levine, Ross L. ;
Ebert, Benjamin L. ;
Gabriel, Stacey ;
Rustgi, Anil K. ;
Antonescu, Cristina R. ;
Ladanyi, Marc ;
Letai, Anthony .
NATURE, 2010, 463 (7283) :899-905
[8]   Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [J].
Birney, Ewan ;
Stamatoyannopoulos, John A. ;
Dutta, Anindya ;
Guigo, Roderic ;
Gingeras, Thomas R. ;
Margulies, Elliott H. ;
Weng, Zhiping ;
Snyder, Michael ;
Dermitzakis, Emmanouil T. ;
Stamatoyannopoulos, John A. ;
Thurman, Robert E. ;
Kuehn, Michael S. ;
Taylor, Christopher M. ;
Neph, Shane ;
Koch, Christoph M. ;
Asthana, Saurabh ;
Malhotra, Ankit ;
Adzhubei, Ivan ;
Greenbaum, Jason A. ;
Andrews, Robert M. ;
Flicek, Paul ;
Boyle, Patrick J. ;
Cao, Hua ;
Carter, Nigel P. ;
Clelland, Gayle K. ;
Davis, Sean ;
Day, Nathan ;
Dhami, Pawandeep ;
Dillon, Shane C. ;
Dorschner, Michael O. ;
Fiegler, Heike ;
Giresi, Paul G. ;
Goldy, Jeff ;
Hawrylycz, Michael ;
Haydock, Andrew ;
Humbert, Richard ;
James, Keith D. ;
Johnson, Brett E. ;
Johnson, Ericka M. ;
Frum, Tristan T. ;
Rosenzweig, Elizabeth R. ;
Karnani, Neerja ;
Lee, Kirsten ;
Lefebvre, Gregory C. ;
Navas, Patrick A. ;
Neri, Fidencio ;
Parker, Stephen C. J. ;
Sabo, Peter J. ;
Sandstrom, Richard ;
Shafer, Anthony .
NATURE, 2007, 447 (7146) :799-816
[9]   A microRNA-regulated lentiviral vector mediates stable correction of hemophilia B mice [J].
Brown, Brian D. ;
Cantore, Alessio ;
Annoni, Andrea ;
Sergi, Lucia Sergi ;
Lombardo, Angelo ;
Della Valle, Patrizia ;
D'Angelo, Armando ;
Naldini, Luigi .
BLOOD, 2007, 110 (13) :4144-4152
[10]   THE HUMAN XIST GENE - ANALYSIS OF A 17 KB INACTIVE X-SPECIFIC RNA THAT CONTAINS CONSERVED REPEATS AND IS HIGHLY LOCALIZED WITHIN THE NUCLEUS [J].
BROWN, CJ ;
HENDRICH, BD ;
RUPERT, JL ;
LAFRENIERE, RG ;
XING, Y ;
LAWRENCE, J ;
WILLARD, HF .
CELL, 1992, 71 (03) :527-542