The current status on the taxonomy of Pseudomonas revisited: An update

被引:179
作者
Peix, Alvaro [1 ,2 ]
Ramirez-Bahena, Martha-Helena [3 ]
Velazquez, Encarna [2 ,3 ]
机构
[1] IRNASA CSIC, Inst Recursos Nat & Agrobiol, Salamanca, Spain
[2] Univ Salamanca, Unidad Asociada, CSIC Interacc Planta Microorg, Salamanca, Spain
[3] Univ Salamanca, Inst Hispanoluso Invest Agrarias, Dept Microbiol & Genet, Salamanca, Spain
关键词
Pseudomonas; Taxonomy; MLSA; Genomes; MALDI-TOF MS; FLIGHT MASS-SPECTROMETRY; DESORPTION-IONIZATION-TIME; SP-NOV; WHOLE-GENOME; 1ST REPORT; DEOXYRIBONUCLEIC-ACID; LEAF-SPOT; PSYCHROTOLERANT BACTERIUM; PSYCHROTROPHIC BACTERIUM; RAPID IDENTIFICATION;
D O I
10.1016/j.meegid.2017.10.026
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
The genus Pseudomonas described in 1894 is one of the most diverse and ubiquitous bacterial genera which encompass species isolated worldwide. In the last years more than 70 new species have been described, which were isolated from different environments, including soil, water, sediments, air, animals, plants, fungi, algae, compost, human and animal related sources. Some of these species have been isolated in extreme environments, such as Antarctica or Atacama desert, and from contaminated water or soil. Also, some species recently described are plant or animal pathogens. In this review, we revised the current status of the taxonomy of genus Pseudomonas and the methodologies currently used for the description of novel species which includes, in addition to the classic ones, new methodologies such as MALDI-TOF MS, MLSA and genome analyses. The novel Pseudomonas species described in the last years are listed, together with the available genome sequences of the type strains of Pseudomonas species present in different databases.
引用
收藏
页码:106 / 116
页数:11
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