Potential Prognostic Biomarkers of OSBPL Family Genes in Patients with Pancreatic Ductal Adenocarcinoma

被引:18
作者
Chou, Cheng-Wei [1 ]
Hsieh, Yu-Hsiu [2 ]
Ku, Su-Chi [3 ,4 ,5 ,6 ]
Shen, Wan-Jou [7 ]
Anuraga, Gangga [3 ,4 ,5 ,8 ]
Khoa Ta, Hoang Dang [3 ,4 ,5 ]
Lee, Kuen-Haur [3 ]
Lee, Yu-Cheng [9 ]
Lin, Cheng-Hsien [1 ]
Wang, Chih-Yang [3 ,4 ,5 ]
Wang, Wei-Jan [2 ,10 ]
机构
[1] Taichung Vet Gen Hosp, Dept Internal Med, Div Hematol Med Oncol, Taichung 40705, Taiwan
[2] China Med Univ, Dept Biol Sci & Technol, Taichung 40676, Taiwan
[3] Taipei Med Univ, Coll Med Sci & Technol, Grad Inst Canc Biol & Drug Discovery, Taipei 11031, Taiwan
[4] Taipei Med Univ, Coll Med Sci & Technol, PhD Program Canc Mol Biol & Drug Discovery, Taipei 11031, Taiwan
[5] Acad Sinica, Taipei 11031, Taiwan
[6] Taipei Med Univ, Coll Med, Sch Med, Taipei 11031, Taiwan
[7] China Med Univ, Coll Med, Grad Inst Biomed Sci, Taichung 40402, Taiwan
[8] Univ PGRI Adi Buana, Fac Sci & Technol, Dept Stat, Surabaya 60234, East Java, Indonesia
[9] Taipei Med Univ, Coll Med, Grad Inst Med Sci, Taipei 11031, Taiwan
[10] China Med Univ, Res Ctr Canc Biol, Taichung 40676, Taiwan
关键词
pancreatic ductal adenocarcinoma; biomarker; OSBPL2; OSBPL3; OSBPL5; OSBPL6; OSBPL7; OSBPL8; OSBPL9; OSBPL10; OSBPL11; LUNG ADENOCARCINOMA; CANCER; EXPRESSION; METABOLISM; SIGNATURES; BURDEN;
D O I
10.3390/biomedicines9111601
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Pancreatic ductal adenocarcinoma (PDAC) is a highly fatal malignancy with poor survival outcomes. In addition, oxysterol-binding protein-like (OSBPL) family members are reported to be involved in lipid binding and transport and play critical roles in tumorigenesis. However, relationships between PDAC and OSBPL family members have not comprehensively been elucidated. In this study, we used the Oncomine and GEPIA 2 databases to analyze OSBPL transcription expressions in PDAC. The Kaplan-Meier plotter and TIMER 2.0 were used to assess the relationships between overall survival (OS) and immune-infiltration with OSBPL family members. Co-expression data from cBioPortal were downloaded to assess the correlated pathways with OSBPL gene family members using DAVID. The expressions of OSBPL3, OSBPL8, OSBPL10, and OSBPL11 were found to be highly upregulated in PDAC. Low expressions of OSBPL3, OSBPL8, and OSBPL10 indicated longer OS. The functions of OSBPL family members were mainly associated with several potential signaling pathways in cancer cells, including ATP binding, integrin binding, receptor binding, and the renin-angiotensin system (RAS) signaling pathway. The transcription levels of OSBPL gene family members were connected with several immune infiltrates. Collectively, OSBPL family members are influential biomarkers for the early diagnosis of PDAC and have prognostic value, with the promise of precise treatment of PDAC in the future.
引用
收藏
页数:20
相关论文
共 62 条
[1]   Comprehensive Analysis of Prognostic and Genetic Signatures for General Transcription Factor III (GTF3) in Clinical Colorectal Cancer Patients Using Bioinformatics Approaches [J].
Anuraga, Gangga ;
Tang, Wan-Chun ;
Nam Nhut Phan ;
Hoang Dang Khoa Ta ;
Liu, Yen-Hsi ;
Wu, Yung-Fu ;
Lee, Kuen-Haur ;
Wang, Chih-Yang .
CURRENT ISSUES IN MOLECULAR BIOLOGY, 2021, 43 (01) :2-20
[2]  
Badea L, 2008, HEPATO-GASTROENTEROL, V55, P2016
[3]   The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity [J].
Barretina, Jordi ;
Caponigro, Giordano ;
Stransky, Nicolas ;
Venkatesan, Kavitha ;
Margolin, Adam A. ;
Kim, Sungjoon ;
Wilson, Christopher J. ;
Lehar, Joseph ;
Kryukov, Gregory V. ;
Sonkin, Dmitriy ;
Reddy, Anupama ;
Liu, Manway ;
Murray, Lauren ;
Berger, Michael F. ;
Monahan, John E. ;
Morais, Paula ;
Meltzer, Jodi ;
Korejwa, Adam ;
Jane-Valbuena, Judit ;
Mapa, Felipa A. ;
Thibault, Joseph ;
Bric-Furlong, Eva ;
Raman, Pichai ;
Shipway, Aaron ;
Engels, Ingo H. ;
Cheng, Jill ;
Yu, Guoying K. ;
Yu, Jianjun ;
Aspesi, Peter, Jr. ;
de Silva, Melanie ;
Jagtap, Kalpana ;
Jones, Michael D. ;
Wang, Li ;
Hatton, Charles ;
Palescandolo, Emanuele ;
Gupta, Supriya ;
Mahan, Scott ;
Sougnez, Carrie ;
Onofrio, Robert C. ;
Liefeld, Ted ;
MacConaill, Laura ;
Winckler, Wendy ;
Reich, Michael ;
Li, Nanxin ;
Mesirov, Jill P. ;
Gabriel, Stacey B. ;
Getz, Gad ;
Ardlie, Kristin ;
Chan, Vivien ;
Myer, Vic E. .
NATURE, 2012, 483 (7391) :603-607
[4]   GAB2 and GAB3 are expressed in a tumor stage-, grade- and histotype-dependent manner and are associated with shorter progression-free survival in ovarian cancer [J].
Berkel, Caglar ;
Cacan, Ercan .
JOURNAL OF CELL COMMUNICATION AND SIGNALING, 2021, 15 (01) :57-70
[5]   Transcriptome analysis of microdissected pancreatic intraepithelial neoplastic lesions [J].
Buchholz, M ;
Braun, M ;
Heidenblut, A ;
Kestler, HA ;
Klöppel, G ;
Schmiegel, W ;
Hahn, SA ;
Lüttges, J ;
Gress, TM .
ONCOGENE, 2005, 24 (44) :6626-6636
[6]   The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data [J].
Cerami, Ethan ;
Gao, Jianjiong ;
Dogrusoz, Ugur ;
Gross, Benjamin E. ;
Sumer, Selcuk Onur ;
Aksoy, Buelent Arman ;
Jacobsen, Anders ;
Byrne, Caitlin J. ;
Heuer, Michael L. ;
Larsson, Erik ;
Antipin, Yevgeniy ;
Reva, Boris ;
Goldberg, Arthur P. ;
Sander, Chris ;
Schultz, Nikolaus .
CANCER DISCOVERY, 2012, 2 (05) :401-404
[7]   CCDC167 as a potential therapeutic target and regulator of cell cycle-related networks in breast cancer [J].
Chen, Pin-Shern ;
Hsu, Hui-Ping ;
Nam Nhut Phan ;
Yen, Meng-Chi ;
Chen, Feng-Wei ;
Liu, Yu-Wei ;
Lin, Fang-Ping ;
Feng, Sheng-Yao ;
Cheng, Tsung-Lin ;
Yeh, Pei-Hsiang ;
Omar, Hany A. ;
Sun, Zhengda ;
Jiang, Jia-Zhen ;
Chan, Yi-Shin ;
Lai, Ming-Derg ;
Wang, Chih-Yang ;
Hung, Jui-Hsiang .
AGING-US, 2021, 13 (03) :4157-4181
[8]  
Chen YL, 2021, AM J CANCER RES, V11, P4277
[9]   Identification of Dipeptidyl Peptidase (DPP) Family Genes in Clinical Breast Cancer Patients via an Integrated Bioinformatics Approach [J].
Choy, Tak-Kee ;
Wang, Chih-Yang ;
Phan, Nam Nhut ;
Khoa Ta, Hoang Dang ;
Anuraga, Gangga ;
Liu, Yen-Hsi ;
Wu, Yung-Fu ;
Lee, Kuen-Haur ;
Chuang, Jian-Ying ;
Kao, Tzu-Jen .
DIAGNOSTICS, 2021, 11 (07)
[10]  
Dobashi Akito, 2018, Oncotarget, V9, P19555, DOI 10.18632/oncotarget.24656